Detailed information NTG1089894

Bioinformatically predicted

Overview

• Name: exbB
• Type: Machinery gene
• Locus tag: ACKUFS_RS04475
• Genome accession: NZ_CP178532
• Coordinates: 934364..935080 (+)
• Length: 238 a.a.
• NCBI ID: WP_080394009.1
• Uniprot ID: -
• Organism: Pseudomonas cannabina strain YM7930
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 929364..940080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUFS_RS04465 (ACKUFS_04465)	-	929850..931877 (-)	2028	WP_054080089.1	type VI secretion system tip protein VgrG	-
ACKUFS_RS04470 (ACKUFS_04470)	comA	932105..934321 (+)	2217	WP_054080088.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACKUFS_RS04475 (ACKUFS_04475)	exbB	934364..935080 (+)	717	WP_080394009.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACKUFS_RS04480 (ACKUFS_04480)	-	935077..935508 (+)	432	WP_007253407.1	ExbD/TolR family protein	-
ACKUFS_RS04485 (ACKUFS_04485)	lpxK	935508..936503 (+)	996	WP_007253406.1	tetraacyldisaccharide 4'-kinase	-
ACKUFS_RS04490 (ACKUFS_04490)	-	936521..936706 (+)	186	WP_007253405.1	Trm112 family protein	-
ACKUFS_RS04495 (ACKUFS_04495)	kdsB	936703..937467 (+)	765	WP_007253404.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACKUFS_RS04500 (ACKUFS_04500)	murB	937502..938521 (+)	1020	WP_007253403.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 238 a.a.
• Molecular weight: 25766.21 Da
• Isoelectric Point: 7.3259

>NTDB_id=1089894 ACKUFS_RS04475 WP_080394009.1 934364..935080(+) (exbB) [Pseudomonas cannabina strain YM7930]
MVEWRQFFDGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQENKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSSGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLAKAGGSKKK

Nucleotide

• Length: 717 bp

>NTDB_id=1089894 ACKUFS_RS04475 WP_080394009.1 934364..935080(+) (exbB) [Pseudomonas cannabina strain YM7930]
ATGGTAGAGTGGCGCCAATTTTTCGATGGAGTGATCACTGTGTGGGAACTGGTCAAGTCTGGCGGCTGGATGATGCTGCC
GATCATTTTGAGTTCCATTGCCGCTGCCGGCATCATCATCGAGCGTTTATGGACGCTGCGGGCCAGCCGGATCGCCCCGC
CGCATCTGTTGGGACAGGCCTGGCAGTGGATTCAGGAAAACAAGCTCGACAGCGAAAAGCTCAAGCAACTGCGCGCCGAT
TCACCCTTGGGTGAAATCCTCGCCGCAGGTCTGGCGAACTCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGA
AGCCGCCGCCCGTGTCATTCATGACCTGGAGCGCTACCTGAGCGCGCTGGGCTCGATTGCTGCCATGGCGCCACTGCTCG
GCCTGCTCGGTACAGTGCTGGGTATGATCGAAATTTTCGGCTCGTTCAACAGTTCCGGCGCGACCGCCAATGCCGGCGTG
CTGGCAAGCGGCATTTCCAAGGCGCTGATTTGTACCGCATCAGGCCTGATCGTCGCGATCCCGGCCATCTTCTTTCATCG
CTTTCTGCAAAGCCGTGTCGACGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAGGTTGATCTCAAGTCGCTCGCCAAAGCGGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

• MotA/TolQ/ExbB proton channel family (MotA_ExbB) (79-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
exbB	Pseudomonas stutzeri DSM 10701	77.619	88.235	0.685