Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACLZ2J_RS18960 Genome accession   NZ_CP178514
Coordinates   3608607..3609329 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS18-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3603607..3614329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS18925 fliW 3603746..3604177 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ACLZ2J_RS18930 yviE 3604198..3604773 (-) 576 WP_003243053.1 DUF6470 family protein -
  ACLZ2J_RS18935 flgL 3604820..3605716 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  ACLZ2J_RS18940 flgK 3605727..3607250 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ACLZ2J_RS18945 flgN 3607269..3607751 (-) 483 WP_003227999.1 flagellar protein FlgN -
  ACLZ2J_RS18950 flgM 3607767..3608033 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLZ2J_RS18955 yvyF 3608114..3608533 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACLZ2J_RS18960 comFC 3608607..3609329 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  ACLZ2J_RS18965 comFB 3609293..3609589 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACLZ2J_RS18970 comFA 3609649..3611040 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  ACLZ2J_RS18975 fakBA 3611146..3611991 (-) 846 WP_003244125.1 DegV family protein -
  ACLZ2J_RS18980 degU 3612089..3612778 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACLZ2J_RS18985 degS 3612861..3614018 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=1089835 ACLZ2J_RS18960 WP_029725992.1 3608607..3609329(-) (comFC) [Bacillus subtilis strain BS18-1]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1089835 ACLZ2J_RS18960 WP_029725992.1 3608607..3609329(-) (comFC) [Bacillus subtilis strain BS18-1]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment