Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACLZ2J_RS13485 Genome accession   NZ_CP178514
Coordinates   2576506..2577273 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain BS18-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2571506..2582273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS13465 ppsR 2571681..2572493 (-) 813 WP_032722128.1 pyruvate, water dikinase regulatory protein -
  ACLZ2J_RS13470 ccpN 2572519..2573157 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ACLZ2J_RS13475 glyS 2573290..2575329 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  ACLZ2J_RS13480 glyQ 2575322..2576209 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ACLZ2J_RS13485 recO 2576506..2577273 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  ACLZ2J_RS13490 yqzL 2577310..2577453 (-) 144 WP_003230053.1 YqzL family protein -
  ACLZ2J_RS13495 era 2577601..2578506 (-) 906 WP_003230051.1 GTPase Era -
  ACLZ2J_RS13500 - 2578487..2578897 (-) 411 WP_003230049.1 cytidine deaminase -
  ACLZ2J_RS13505 unpK 2579016..2579387 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  ACLZ2J_RS13510 ybeY 2579368..2579841 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ACLZ2J_RS13515 pgpH 2579842..2581977 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=1089816 ACLZ2J_RS13485 WP_003230055.1 2576506..2577273(-) (recO) [Bacillus subtilis strain BS18-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1089816 ACLZ2J_RS13485 WP_003230055.1 2576506..2577273(-) (recO) [Bacillus subtilis strain BS18-1]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment