Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACLZ2J_RS12955 Genome accession   NZ_CP178514
Coordinates   2485583..2486386 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS18-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2480583..2491386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS12930 glpQB 2481729..2482460 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  ACLZ2J_RS12935 yqiI 2482539..2483159 (-) 621 WP_413154945.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLZ2J_RS12940 yqiH 2483174..2483467 (-) 294 WP_003230284.1 lipoprotein -
  ACLZ2J_RS12945 - 2483775..2483927 (+) 153 WP_003230276.1 hypothetical protein -
  ACLZ2J_RS12950 yqiG 2484000..2485118 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  ACLZ2J_RS12955 spo0A 2485583..2486386 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACLZ2J_RS12960 spoIVB 2486662..2487942 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ACLZ2J_RS12965 recN 2488117..2489847 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  ACLZ2J_RS12970 argR 2489884..2490333 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ACLZ2J_RS12975 yqxC 2490431..2491276 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1089805 ACLZ2J_RS12955 WP_003226427.1 2485583..2486386(-) (spo0A) [Bacillus subtilis strain BS18-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1089805 ACLZ2J_RS12955 WP_003226427.1 2485583..2486386(-) (spo0A) [Bacillus subtilis strain BS18-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment