Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACLZ2J_RS11970 Genome accession   NZ_CP178514
Coordinates   2308369..2308989 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS18-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2303369..2313989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS11930 ptsA 2304500..2305006 (-) 507 WP_009967573.1 PTS glucose transporter subunit IIA -
  ACLZ2J_RS11935 ypqA 2305144..2305563 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ACLZ2J_RS11940 sppG 2305584..2305961 (-) 378 WP_004398696.1 YppG family protein -
  ACLZ2J_RS11945 yppF 2306149..2306337 (+) 189 WP_003230690.1 YppF family protein -
  ACLZ2J_RS11950 yppE 2306376..2306747 (-) 372 WP_003246080.1 YppE family protein -
  ACLZ2J_RS11955 yppD 2306793..2307038 (-) 246 WP_004398488.1 YppD family protein -
  ACLZ2J_RS11960 sspM 2307237..2307341 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACLZ2J_RS11965 yppC 2307366..2308328 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ACLZ2J_RS11970 recU 2308369..2308989 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACLZ2J_RS11975 ponA 2309011..2311755 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  ACLZ2J_RS11980 ypoC 2311831..2312325 (-) 495 WP_009967579.1 YpoC family protein -
  ACLZ2J_RS11985 nth 2312322..2312981 (-) 660 WP_009967580.1 endonuclease III -
  ACLZ2J_RS11990 dnaD 2313000..2313698 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1089804 ACLZ2J_RS11970 WP_004399067.1 2308369..2308989(+) (recU) [Bacillus subtilis strain BS18-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1089804 ACLZ2J_RS11970 WP_004399067.1 2308369..2308989(+) (recU) [Bacillus subtilis strain BS18-1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment