Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACLZ2J_RS05665 Genome accession   NZ_CP178514
Coordinates   1094188..1094766 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain BS18-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089188..1099766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS05640 - 1089699..1090214 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  ACLZ2J_RS05645 - 1090455..1091081 (-) 627 Protein_1045 protoglobin domain-containing protein -
  ACLZ2J_RS05650 comW 1091136..1092665 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  ACLZ2J_RS05655 yhxC 1092777..1093634 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ACLZ2J_RS05660 yhzC 1093662..1093895 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACLZ2J_RS05665 comK 1094188..1094766 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACLZ2J_RS05670 yhxD 1094813..1095712 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ACLZ2J_RS05675 yhjA 1095929..1096198 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  ACLZ2J_RS05680 yhjB 1096241..1097710 (-) 1470 WP_003233134.1 sodium:solute symporter family protein -
  ACLZ2J_RS05685 yhjC 1097707..1097907 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACLZ2J_RS05690 - 1098115..1098477 (-) 363 WP_003233132.1 hypothetical protein -
  ACLZ2J_RS05695 yhjE 1098629..1099252 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ACLZ2J_RS05700 lepB 1099254..1099760 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1089785 ACLZ2J_RS05665 WP_003245329.1 1094188..1094766(+) (comK) [Bacillus subtilis strain BS18-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1089785 ACLZ2J_RS05665 WP_003245329.1 1094188..1094766(+) (comK) [Bacillus subtilis strain BS18-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment