Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HW10_RS02005 Genome accession   NZ_CP008856
Coordinates   421338..422687 (+) Length   449 a.a.
NCBI ID   WP_019396052.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F23197     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416338..427687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW10_RS01985 (HW10_11415) - 417175..417741 (-) 567 WP_003117889.1 hypothetical protein -
  HW10_RS01990 (HW10_11410) rsmD 417744..418340 (-) 597 WP_009875718.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HW10_RS01995 (HW10_11405) - 418340..419827 (-) 1488 WP_003102862.1 M16 family metallopeptidase -
  HW10_RS02000 (HW10_11400) - 419820..421217 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  HW10_RS02005 (HW10_11395) pilA 421338..422687 (+) 1350 WP_019396052.1 signal recognition particle-docking protein FtsY Machinery gene
  HW10_RS02010 (HW10_11390) ftsE 422684..423355 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  HW10_RS02015 (HW10_11385) ftsX 423355..424362 (+) 1008 WP_033937025.1 permease-like cell division protein FtsX -
  HW10_RS02020 (HW10_11380) rpoH 424476..425330 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  HW10_RS02025 (HW10_11375) - 425395..426000 (+) 606 WP_003084511.1 hypothetical protein -
  HW10_RS02030 (HW10_11370) mtgA 426005..426736 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  HW10_RS02035 (HW10_11365) - 426773..427150 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  HW10_RS02040 (HW10_11360) thiS 427253..427453 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47801.19 Da        Isoelectric Point: 4.5795

>NTDB_id=108971 HW10_RS02005 WP_019396052.1 421338..422687(+) (pilA) [Pseudomonas aeruginosa strain F23197]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAPVAEA
PLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGE
GMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVA
REPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQA
AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDG
TAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=108971 HW10_RS02005 WP_019396052.1 421338..422687(+) (pilA) [Pseudomonas aeruginosa strain F23197]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCGCCGGTTGCCGAAGCA
CCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACCAGAGCCTAT
CCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCTCTGGCCGCCGCTCCGGCAG
TCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAA
GGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGC
CGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCG
GCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCG
CGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCT
GCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGG
GCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCC
GCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCT
GAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCG
GGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGC
ACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGAT
CGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(244-443)

SRP54-type protein, helical bundle domain (SRP54_N)

(159-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.529

94.655

0.45

Multiple sequence alignment