Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACLWNE_RS09015 Genome accession   NZ_CP178485
Coordinates   1739868..1740782 (+) Length   304 a.a.
NCBI ID   WP_339956197.1    Uniprot ID   -
Organism   Thermus oshimai strain Blanco     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1734868..1745782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLWNE_RS08990 (ACLWNE_08990) prmC 1735042..1735953 (+) 912 WP_413217120.1 peptide chain release factor N(5)-glutamine methyltransferase -
  ACLWNE_RS08995 (ACLWNE_08995) - 1736989..1737210 (-) 222 Protein_1764 DUF3084 domain-containing protein -
  ACLWNE_RS09000 (ACLWNE_09000) lptB 1737211..1737939 (-) 729 WP_016329979.1 LPS export ABC transporter ATP-binding protein -
  ACLWNE_RS09005 (ACLWNE_09005) gltX 1737994..1739403 (+) 1410 WP_339956198.1 glutamate--tRNA ligase -
  ACLWNE_RS09010 (ACLWNE_09010) - 1739421..1739864 (+) 444 WP_018461301.1 hypothetical protein -
  ACLWNE_RS09015 (ACLWNE_09015) pilA 1739868..1740782 (+) 915 WP_339956197.1 signal recognition particle-docking protein FtsY Machinery gene
  ACLWNE_RS09020 (ACLWNE_09020) - 1740801..1741232 (+) 432 WP_339956196.1 disulfide oxidoreductase -
  ACLWNE_RS09025 (ACLWNE_09025) - 1741356..1742447 (-) 1092 WP_014514485.1 IS4 family transposase -
  ACLWNE_RS09030 (ACLWNE_09030) - 1742878..1743597 (-) 720 WP_339956195.1 hypothetical protein -
  ACLWNE_RS09035 (ACLWNE_09035) - 1743594..1745675 (-) 2082 WP_339956194.1 ATP-dependent helicase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 32637.74 Da        Isoelectric Point: 7.0013

>NTDB_id=1089706 ACLWNE_RS09015 WP_339956197.1 1739868..1740782(+) (pilA) [Thermus oshimai strain Blanco]
MGFFDRLKAGLAKTRERLLGAIPWGGNPEEVLEELETALLAADVGLRATEELLEALRASGRKDLKEAVKEKLVQMLEPEE
RRATLRRLGFKPQTPKAVEPKGHVVMVVGVNGVGKTTTVAKLGHYYRNLGKKVLLGAGDTFRAAGSAQLVEWAERLGLPV
IQGQEGADPAALAFDAATARRARGYDLLLLDTAGRLHTKGGLMEELKKVKRAIHKADPGEPGEVWLVLDAVTGQNGLEQA
KRFHEAVGLTGVIVTKLDGTAKGGVVVQVVEALKVPVRFIGVGEGPEDLQPFDPEAFVEALLEA

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1089706 ACLWNE_RS09015 WP_339956197.1 1739868..1740782(+) (pilA) [Thermus oshimai strain Blanco]
ATGGGCTTTTTTGACCGGCTTAAGGCGGGGCTCGCCAAAACCCGGGAAAGGCTCCTCGGCGCCATCCCCTGGGGGGGCAA
CCCCGAGGAGGTCTTGGAGGAGCTGGAAACCGCCCTCCTCGCGGCGGACGTGGGCCTTAGGGCCACGGAGGAGCTCCTGG
AGGCCCTCCGGGCCTCGGGGCGGAAGGACCTGAAGGAGGCGGTGAAGGAAAAGCTCGTCCAGATGCTGGAGCCTGAGGAG
CGGCGGGCCACCCTTAGGCGGCTTGGCTTTAAGCCCCAAACCCCCAAGGCGGTGGAGCCCAAGGGGCACGTGGTCATGGT
GGTGGGGGTGAATGGGGTGGGCAAGACCACCACCGTGGCCAAGCTGGGGCACTACTACCGGAACCTGGGGAAGAAGGTCC
TCCTGGGGGCGGGGGACACCTTCCGGGCCGCGGGGAGCGCCCAGCTTGTGGAGTGGGCGGAGCGGCTTGGCCTCCCCGTG
ATCCAGGGCCAGGAAGGGGCCGACCCCGCCGCCTTAGCCTTTGACGCCGCCACCGCCAGGAGGGCCCGGGGCTACGACCT
CCTCCTCCTGGACACCGCGGGCCGCCTCCACACCAAGGGGGGGCTCATGGAGGAGCTCAAGAAGGTGAAGCGGGCCATCC
ATAAGGCGGACCCCGGGGAGCCGGGGGAGGTCTGGCTGGTCTTGGACGCGGTCACGGGCCAAAACGGCCTGGAGCAGGCC
AAGCGCTTCCACGAGGCGGTAGGGCTTACGGGGGTCATCGTCACCAAGCTGGACGGCACGGCCAAGGGAGGGGTGGTGGT
CCAGGTGGTGGAGGCCCTGAAGGTGCCCGTGCGCTTCATCGGCGTGGGGGAGGGGCCGGAGGACCTCCAGCCCTTTGACC
CCGAGGCCTTCGTGGAGGCCCTCTTGGAGGCCTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(29-70)

SRP54-type protein, GTPase domain (SRP54)

(103-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.726

100

0.503

Multiple sequence alignment