Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLTDJ_RS03855 Genome accession   NZ_CP178394
Coordinates   805174..806541 (+) Length   455 a.a.
NCBI ID   WP_083369766.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain S31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 800174..811541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLTDJ_RS03830 (ACLTDJ_03830) - 800377..801090 (-) 714 WP_095023428.1 helix-turn-helix transcriptional regulator -
  ACLTDJ_RS03835 (ACLTDJ_03835) - 801458..802234 (+) 777 WP_094999367.1 ferredoxin--NADP reductase -
  ACLTDJ_RS03840 (ACLTDJ_03840) mscL 802305..802718 (-) 414 WP_094999366.1 large-conductance mechanosensitive channel protein MscL -
  ACLTDJ_RS03845 (ACLTDJ_03845) katB 802985..804526 (+) 1542 WP_094999365.1 catalase KatB -
  ACLTDJ_RS03850 (ACLTDJ_03850) - 804598..805128 (+) 531 WP_095027005.1 ankyrin repeat domain-containing protein -
  ACLTDJ_RS03855 (ACLTDJ_03855) radA 805174..806541 (+) 1368 WP_083369766.1 DNA repair protein RadA Machinery gene
  ACLTDJ_RS03860 (ACLTDJ_03860) - 806757..808823 (+) 2067 WP_094999363.1 carbon starvation CstA family protein -
  ACLTDJ_RS03865 (ACLTDJ_03865) - 808839..809036 (+) 198 WP_007937254.1 YbdD/YjiX family protein -
  ACLTDJ_RS03870 (ACLTDJ_03870) yjiA 809183..810151 (+) 969 WP_094999362.1 GTPase -
  ACLTDJ_RS03875 (ACLTDJ_03875) - 810252..810806 (-) 555 WP_413052379.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48755.36 Da        Isoelectric Point: 7.1315

>NTDB_id=1089447 ACLTDJ_RS03855 WP_083369766.1 805174..806541(+) (radA) [Pseudomonas bubulae strain S31]
MAKPKRIYGCTECGATFPKWAGQCGECGVWNTLVETIVESGAAAPPSGRTGWTGQQAQLKTLAEVSIEELPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCQMATRMPALYVTGEESQQQVAMRARRLGLPQDQLKVMTETCIESIIA
TAKLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKSSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLKVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1089447 ACLTDJ_RS03855 WP_083369766.1 805174..806541(+) (radA) [Pseudomonas bubulae strain S31]
ATGGCCAAGCCCAAGCGCATTTACGGCTGCACCGAGTGCGGCGCAACTTTCCCCAAGTGGGCCGGGCAGTGCGGCGAGTG
CGGCGTCTGGAACACCCTGGTGGAAACCATCGTTGAAAGCGGGGCTGCGGCGCCGCCCAGCGGCCGTACCGGCTGGACCG
GACAACAGGCCCAGCTCAAGACCCTGGCTGAAGTCAGCATCGAGGAGCTGCCGCGCTTCTCCACCGCTTCTGGCGAGCTG
GATCGGGTGCTTGGCGGCGGTCTGGTGGATGGCTCGGTGGTGTTGATTGGTGGCGATCCGGGGATCGGCAAATCCACCAT
CCTGCTGCAAACCTTGTGTCAGATGGCTACACGCATGCCTGCGTTGTACGTCACCGGCGAGGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGGCGCCTGGGGCTGCCGCAGGATCAGCTCAAGGTGATGACCGAAACCTGCATTGAAAGCATCATCGCC
ACTGCCAAGCTGGAAAAGCCCAAGGTCATGGTCATCGACTCGATTCAGACCATCTTTACCGAGCAACTGCAATCGGCCCC
CGGCGGCGTGTCGCAAGTGCGTGAAAGTGCGGCCTTGCTGGTGCGTTATGCCAAGTCCAGCGGCACGGCGATTTTCCTGG
TGGGCCATGTGACCAAAGAAGGCGCATTGGCCGGGCCGCGGGTGCTGGAGCATATGGTGGATACCGTACTGTATTTCGAG
GGTGAATCCGACGGGCGGCTGCGCTTGCTGCGGGCAGTGAAAAACCGTTTTGGCGCGGTCAACGAGCTGGGCGTATTCGG
TATGACCGACAAAGGCCTGAAGGAAGTTTCCAACCCTTCCGCAATTTTCCTTACCCGCGCCCAGGAAGAAGTCCCTGGCA
GTGTGGTGATGGCCACCTGGGAAGGGACTCGCCCGATGCTGGTGGAGGTGCAGGCGCTGGTGGACGACAGCCATATGTCC
AACCCGCGGCGGGTGACCCTGGGCCTGGACCAGAATCGTCTGGCCATGTTATTGGCCGTATTGCATCGACACGGCGGTAT
TCCAACCCACGATCAGGATGTTTTCCTGAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCATCGGACCTGGCGCTCA
TGGCCGCCGTGATGTCCAGCCTGCGTAATCGTCCGTTGCCCCATGATCTGCTGGTGTTCGGTGAAGTCGGCCTGTCGGGT
GAGGTGCGCCCTGTGCCAAGCGGCCAGGAGCGGCTCAAGGAAGCGGCCAAGCACGGTTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCCAAGGAGTCGCCGCCGGGGCTGAAAGTCATTGGCGTTACCCGTCTGGAACAGGCGTTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus mitis NCTC 12261

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

47.149

100

0.473
  radA Streptococcus pneumoniae D39

47.149

100

0.473
  radA Streptococcus pneumoniae R6

47.149

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.473

Multiple sequence alignment