Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACLRDL_RS15840 Genome accession   NZ_CP178388
Coordinates   577772..578941 (+) Length   389 a.a.
NCBI ID   WP_001039918.1    Uniprot ID   -
Organism   Vibrio cholerae isolate CTMA_1842     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 572772..583941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDL_RS15825 (ACLRDL_15825) - 573605..574594 (-) 990 WP_000610706.1 CobW family GTP-binding protein -
  ACLRDL_RS15830 (ACLRDL_15830) clcA 575060..576466 (+) 1407 WP_000107456.1 H(+)/Cl(-) exchange transporter ClcA -
  ACLRDL_RS15835 (ACLRDL_15835) - 576613..577575 (+) 963 WP_001104009.1 TDT family transporter -
  ACLRDL_RS15840 (ACLRDL_15840) cqsA 577772..578941 (+) 1170 WP_001039918.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACLRDL_RS15845 (ACLRDL_15845) cqsS 579043..581102 (-) 2060 Protein_505 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43529.59 Da        Isoelectric Point: 6.2265

>NTDB_id=1089407 ACLRDL_RS15840 WP_001039918.1 577772..578941(+) (cqsA) [Vibrio cholerae isolate CTMA_1842]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKLTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQITKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=1089407 ACLRDL_RS15840 WP_001039918.1 577772..578941(+) (cqsA) [Vibrio cholerae isolate CTMA_1842]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTTTGGCTAAGCTCACAGGCTTTGATGAATGCCTATTATCCCAATC
TGGTTGGAACGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCACGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGTCCTGGGATCATTGTCGTAGACTCGATTTACAGCACTTTAGGTACGATTGCACCTCTGGCGGA
ACTGGTCAATATCAGCAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGTACACATGGTCCTAATG
GTGCAGGCTTACTGGCAGAATTAGGCCTTACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCAGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACCACATTAGAGATTATTGAGTCTGCGGATAATCGGCGTCAGCATTTAG
ATCGTATGGCGAGAAAATTACGCATAGGATTATCCCAGTTGGGATTAACCATTCGAAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCGAAGAATAAAAACATTATTCGTTTATCACTCAATAGTGATGTGAACGATGAACAAATCACCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGTGGTGATTTTTATTTCCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

99.229

100

0.992

Multiple sequence alignment