Detailed information NTG1089399

Bioinformatically predicted

Overview

• Name: tfoS
• Type: Regulator
• Locus tag: ACLRDL_RS10950
• Genome accession: NZ_CP178387
• Coordinates: 2410288..2413536 (-)
• Length: 1082 a.a.
• NCBI ID: WP_413084091.1
• Uniprot ID: -
• Organism: Vibrio cholerae isolate CTMA_1842
• Function: chitin sensor (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	2413598..2414775	2410288..2413536	flank	62

Gene organization within MGE regions

Location: 2410288..2414775

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLRDL_RS10950 (ACLRDL_10950)	tfoS	2410288..2413536 (-)	3249	WP_413084091.1	AraC family transcriptional regulator	Regulator
ACLRDL_RS10955 (ACLRDL_10955)	-	2413598..2414775 (+)	1178	WP_086010879.1	IS3-like element ISVch4 family transposase	-

Sequence

Protein

• Length: 1082 a.a.
• Molecular weight: 122754.46 Da
• Isoelectric Point: 6.7971

>NTDB_id=1089399 ACLRDL_RS10950 WP_413084091.1 2410288..2413536(-) (tfoS) [Vibrio cholerae isolate CTMA_1842]
MPLQQGKVIVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLPQLSSHIVYANSAFWAFEQHELFRTYPGGEREL
MLSLTPGTQIIQMGASNGMIWMVDGENFYSYEIRSGRVESLSLHELYQLNSASKVVINDAQFLVSKWALATNVGVYLSDE
QGFAHVKNSGKHFIQKLYFSHKRRELLVGSKRGALVIDIENKRPPLDRIGSSHVLSIAETEKEYWIGTEDGLFVYSFITG
KIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLA
ITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKGLVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWG
TSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTEHGAYSLLEKQIRFDFSSHRYGEILQVAEDSSG
HIWLVGSYGVFQWRKDQPEAVTVELIEENIQPLCIAESKQGMWLISTKGISYYRNQELTKHFGAPYGLISNEFLSASCAV
GEEQDTSSLIIGSHFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKLLGYRMSEPLKIAYGDSISFQFGALPSSRSQSL
EYKLNDEQQWQRFDWALLNFDQLLPGKYRLKVRSANSTQRYRTEALFDFEVLQPWYMTSIALVGYVLSVLGLLALALWWR
TRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILGNVLDNIDASLRHLSSYAKVRAWSEFEAPFNKV
KQELAQLHFMHRGDEDESKYHDLHLLIESALKSWQEEYSKALIKLTYSGEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQ
ELTIQLEVRNAQAVIVFSDFGAPIQNIDKTMVTLSGSSYPLEELVTRSGGVLHVLALKERNVIELAWPLATLPELETIHK
PEEGEQAAKVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTTAQALYVSERSLQRRFKAATGKTFKESLNEVRLEKACQSL
LSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide

• Length: 3249 bp

>NTDB_id=1089399 ACLRDL_RS10950 WP_413084091.1 2410288..2413536(-) (tfoS) [Vibrio cholerae isolate CTMA_1842]
ATGCCACTACAGCAGGGGAAAGTTATTGTTGCGCAAAATCTCTACCTCGGTAGTGATGGGGGGATTTGGGTACATGATGT
TCATGGCAAAGTGATGTACTTTGATGGACAAAACGTCTTGCCTCGTCGTGGTTCTGTTCTGCCGCAGTTGTCCAGTCATA
TTGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCCGGGGGAGAAAGAGAGCTG
ATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGGGCCTCAAATGGCATGATCTGGATGGTCGATGGGGAAAA
CTTCTATAGTTATGAGATCCGAAGTGGCCGCGTCGAATCCCTCTCGTTACATGAACTTTATCAGCTCAATAGTGCCAGCA
AGGTCGTGATTAACGATGCGCAGTTTTTAGTCTCGAAATGGGCTTTAGCGACTAATGTTGGGGTGTATTTATCTGATGAA
CAAGGTTTTGCCCATGTAAAAAATTCTGGCAAGCACTTTATCCAAAAGCTCTATTTTTCCCATAAGCGGCGAGAGCTATT
AGTTGGGTCTAAACGTGGCGCGTTAGTCATTGATATTGAAAATAAACGTCCACCACTGGATAGAATTGGTTCCTCCCATG
TCCTCTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGGCTCTTTGTTTACTCTTTTATCACCGGG
AAAATCGTGCAACTTGAGAGTAACAACCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACGCCATGGTGAATGATTT
TCAAGGTGGAATGTGGATAGGAACTGACAAGGGGATTTTTTATTACTCCCTATTTGGCCAGCAGTTTACTCGGTATCCGG
CGCAAGCATTATCTAACGACGGAAGTAAAACACCGATCGGTAAAATAGCCGCTCTTAACTCGGATGGAGACTATCTGGCG
ATAACCGCACAAGGCCTGTATAACTTTAATTTTTCAGATGAGCTACGTAAGCATCTTATCTATCCAGGTAAAGTAAATGA
TTTTGTGATTGCCCAAGAGCATCTCTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTCAGTCGTCGTAGTATTG
ATACGCCCAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAGCATCTGAGCTTAGATAGTGACGGTAACTTATGGGGG
ACAAGTGATTACCAAATATGGTCATACTCACTCTCTGAAAAAAATTACCGAGATTATGGTTCTGAATGGATGGTGAAGGC
TTTTTCTCCATCACGGATCACTCTGCTTGCCGCAGTAAAAGACGGCATAGTGATTGGGACGGAACATGGCGCTTATTCCC
TGCTTGAAAAACAGATCCGCTTTGATTTTTCGAGTCATCGCTATGGTGAGATTTTACAAGTTGCTGAAGATTCTTCAGGC
CACATTTGGCTTGTTGGCTCTTATGGGGTTTTTCAGTGGCGTAAAGATCAACCCGAAGCTGTCACTGTCGAGTTAATTGA
AGAGAATATACAGCCTTTGTGTATTGCTGAGTCTAAGCAGGGGATGTGGCTTATCTCCACCAAAGGGATCAGTTATTACC
GTAATCAAGAGCTCACTAAGCATTTTGGGGCTCCTTATGGACTGATCAGTAATGAGTTCTTGTCTGCATCGTGTGCGGTG
GGTGAGGAGCAAGATACCTCATCTTTGATCATAGGATCGCATTTTGGTGTAGTGAAAACCAATACAGAAGAATTAGCGGT
GTCTAATTTGCCCAATATTCAGGTGACGTTTAGCCAAGTCAGCGTAAATCATACGACCAAGCTTTTGGGGTATCGTATGT
CCGAGCCACTAAAAATTGCTTATGGTGATTCGATCAGCTTTCAGTTTGGCGCTTTACCCTCTTCACGCAGCCAATCTTTA
GAATACAAACTCAACGATGAACAGCAGTGGCAGCGCTTTGATTGGGCGCTGCTCAATTTTGATCAACTTTTACCTGGTAA
GTATCGTTTGAAAGTCCGTAGCGCCAATTCGACACAGCGATACCGAACTGAGGCCCTGTTTGATTTTGAAGTCTTACAGC
CTTGGTATATGACCTCCATCGCGCTTGTCGGATATGTGCTGAGCGTGTTGGGGCTATTAGCACTCGCTTTATGGTGGCGA
ACAAGAATGATATTGGCAGCTAACCGCAAACTCAAAGCGCAAGTGGAGCTCAAAACCAGTCAGTTACGTCATCAAAGTAA
AATTGTACTGAGCAACAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGTAACGTGTTAGACAATA
TTGATGCTTCATTGCGGCACTTATCTTCTTACGCCAAAGTACGAGCATGGAGTGAATTTGAAGCACCGTTCAACAAGGTG
AAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAGGATGAAAGCAAATATCATGATTTGCATCTTTTGAT
TGAGTCTGCATTGAAGAGTTGGCAGGAAGAGTACAGTAAAGCCTTGATTAAGCTAACTTACAGCGGTGAGCCTCGCTTTG
TGGAAGTCCGACAATTCAACCTTGATGTGTTATTTAATGCTGTATTAACGGATGCGATCAAACGTTTGTATAAGCATCAA
GAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTGTTTTCTGATTTTGGTGCCCCAATCCAAAACAT
AGACAAAACCATGGTGACGTTATCTGGTAGTAGTTATCCGCTTGAAGAGTTAGTCACTCGTAGTGGTGGTGTATTGCATG
TGCTCGCATTGAAAGAGCGTAATGTGATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTTAGAAACCATTCATAAA
CCAGAAGAAGGGGAGCAGGCGGCTAAGGTTGGGATCGATGAGGTGGAGAAAGAGTGGCTAAGCAAAGTCGAGAAACTGAT
TGAGCTGCATTATAGCGACCCCAATTTCACCACATCCACTACAGCGCAGGCGCTTTATGTCTCTGAACGAAGTTTACAGC
GTCGCTTTAAAGCCGCGACAGGAAAAACCTTCAAAGAGTCGTTAAATGAGGTTCGCTTAGAAAAAGCGTGTCAAAGCTTA
TTGAGTGGGGCGAAAATCGCACAAGTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCAGTCAGCGTTTCAAACA
TCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

• Helix-turn-helix domain (HTH_18) (1002-1077)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tfoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.261	100	0.994