Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACLRDL_RS07290 Genome accession   NZ_CP178387
Coordinates   1546790..1548214 (-) Length   474 a.a.
NCBI ID   WP_413084052.1    Uniprot ID   -
Organism   Vibrio cholerae isolate CTMA_1842     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1541790..1553214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDL_RS07265 (ACLRDL_07265) purT 1542299..1543474 (-) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -
  ACLRDL_RS07270 (ACLRDL_07270) - 1543628..1544503 (-) 876 WP_000462874.1 AEC family transporter -
  ACLRDL_RS07275 (ACLRDL_07275) cdd 1544662..1545549 (-) 888 WP_001245905.1 cytidine deaminase -
  ACLRDL_RS07280 (ACLRDL_07280) - 1545719..1546393 (-) 675 WP_000266237.1 LrgB family protein -
  ACLRDL_RS07285 (ACLRDL_07285) - 1546384..1546758 (-) 375 WP_001881007.1 CidA/LrgA family protein -
  ACLRDL_RS07290 (ACLRDL_07290) sbcB 1546790..1548214 (-) 1425 WP_413084052.1 exodeoxyribonuclease I Machinery gene
  ACLRDL_RS07295 (ACLRDL_07295) - 1548358..1549731 (-) 1374 WP_000117953.1 L-cystine transporter -
  ACLRDL_RS07300 (ACLRDL_07300) msrB 1550077..1550523 (+) 447 WP_148491210.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ACLRDL_RS07305 (ACLRDL_07305) cobT 1551134..1552159 (+) 1026 WP_000887079.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACLRDL_RS07310 (ACLRDL_07310) - 1552159..1552944 (+) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54540.97 Da        Isoelectric Point: 6.0792

>NTDB_id=1089393 ACLRDL_RS07290 WP_413084052.1 1546790..1548214(-) (sbcB) [Vibrio cholerae isolate CTMA_1842]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLIELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1089393 ACLRDL_RS07290 WP_413084052.1 1546790..1548214(-) (sbcB) [Vibrio cholerae isolate CTMA_1842]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATAACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCACGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCACACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGATAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.156

100

0.992

Multiple sequence alignment