Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACLRDL_RS04035 Genome accession   NZ_CP178387
Coordinates   827507..828025 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae isolate CTMA_1842     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 822507..833025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDL_RS04025 (ACLRDL_04025) - 822917..825772 (+) 2856 WP_267757722.1 M16 family metallopeptidase -
  ACLRDL_RS04030 (ACLRDL_04030) gshA 825884..827458 (+) 1575 WP_000032616.1 glutamate--cysteine ligase -
  ACLRDL_RS04035 (ACLRDL_04035) luxS 827507..828025 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  ACLRDL_RS04040 (ACLRDL_04040) - 828095..829375 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  ACLRDL_RS04045 (ACLRDL_04045) - 829458..830252 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  ACLRDL_RS04050 (ACLRDL_04050) ffh 830465..831850 (+) 1386 WP_000462715.1 signal recognition particle protein -
  ACLRDL_RS04055 (ACLRDL_04055) rpsP 832086..832334 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  ACLRDL_RS04060 (ACLRDL_04060) rimM 832362..832916 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=1089385 ACLRDL_RS04035 WP_001130227.1 827507..828025(+) (luxS) [Vibrio cholerae isolate CTMA_1842]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1089385 ACLRDL_RS04035 WP_001130227.1 827507..828025(+) (luxS) [Vibrio cholerae isolate CTMA_1842]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATTTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment