Detailed information NTG1089370

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACLRDL_RS00620
• Genome accession: NZ_CP178387
• Coordinates: 111782..112789 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae isolate CTMA_1842
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 106782..117789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLRDL_RS00595 (ACLRDL_00595)	rraA	107357..107872 (-)	516	WP_000456242.1	ribonuclease E activity regulator RraA	-
ACLRDL_RS00600 (ACLRDL_00600)	-	107947..108864 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ACLRDL_RS00605 (ACLRDL_00605)	hslU	108968..110299 (-)	1332	WP_001293367.1	HslU--HslV peptidase ATPase subunit	-
ACLRDL_RS00610 (ACLRDL_00610)	hslV	110365..110922 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
ACLRDL_RS00615 (ACLRDL_00615)	-	111059..111610 (-)	552	WP_001891621.1	SPOR domain-containing protein	-
ACLRDL_RS00620 (ACLRDL_00620)	cytR	111782..112789 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
ACLRDL_RS00625 (ACLRDL_00625)	priA	113095..115299 (-)	2205	WP_001247858.1	primosomal protein N'	-
ACLRDL_RS00630 (ACLRDL_00630)	rpmE	115554..115772 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
ACLRDL_RS00635 (ACLRDL_00635)	-	116080..117357 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
ACLRDL_RS00640 (ACLRDL_00640)	metJ	117468..117785 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=1089370 ACLRDL_RS00620 WP_000224452.1 111782..112789(-) (cytR) [Vibrio cholerae isolate CTMA_1842]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=1089370 ACLRDL_RS00620 WP_000224452.1 111782..112789(-) (cytR) [Vibrio cholerae isolate CTMA_1842]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGTTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904