Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACLSIV_RS02170 Genome accession   NZ_CP178385
Coordinates   430658..432523 (+) Length   621 a.a.
NCBI ID   WP_172506946.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain GCULR     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 425658..437523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSIV_RS02150 (ACLSIV_02150) - 425748..426776 (+) 1029 WP_167841040.1 sugar ABC transporter substrate-binding protein -
  ACLSIV_RS02155 (ACLSIV_02155) - 427019..428209 (+) 1191 WP_172506948.1 iron-containing alcohol dehydrogenase -
  ACLSIV_RS02160 (ACLSIV_02160) - 428360..428815 (+) 456 WP_096039973.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLSIV_RS02165 (ACLSIV_02165) rcrP 428886..430658 (+) 1773 WP_172506947.1 ABC transporter ATP-binding protein Regulator
  ACLSIV_RS02170 (ACLSIV_02170) rcrQ 430658..432523 (+) 1866 WP_172506946.1 ABC transporter ATP-binding protein Regulator
  ACLSIV_RS02175 (ACLSIV_02175) - 432646..433404 (+) 759 WP_167839714.1 tyrosine-protein phosphatase -
  ACLSIV_RS02180 (ACLSIV_02180) - 433678..434085 (+) 408 WP_167839715.1 hypothetical protein -
  ACLSIV_RS02185 (ACLSIV_02185) - 434150..434506 (+) 357 WP_061773765.1 hypothetical protein -
  ACLSIV_RS02190 (ACLSIV_02190) - 434532..434897 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 67622.93 Da        Isoelectric Point: 5.9378

>NTDB_id=1089281 ACLSIV_RS02170 WP_172506946.1 430658..432523(+) (rcrQ) [Lactococcus raffinolactis strain GCULR]
MPTTKNTPKKSNGGGFGPGRGLGRGGEKPKDVKKALGDLAKYVKPWYPAILVAAIAACGGAYLTIIGPDRLSEITNKIMA
GLRASFIPKGMPGHGDIDMKAITAIGVTLIAFYLGSALLSYTQGFIMATVTQRTSKKLRQDISTKINKLPLRYFDSHPYG
DTLSRVTNDVDAISQALNQSVGSLVSALTLFFGTIIMMFKTNVEMSLTAIATTAIGFGLMMLIMTKSQRFFNAQQNGLGE
VNGFVEEVYTGHNIVRVSNADKSKQDEFDEINERLYNSVWKSQFLSGLMMPLMQFIGNFGYGAVCLVGAILAIYGKIEFG
VIVAFMIYIRLFTQPLTQIAQAVTSMQSAGAASERIFTFLAEPELEDETGKATTLVNPKGAVEFKNVHFGYNADRVIIND
FSAKAEPGQKIAIVGPTGAGKSTMVNLLMRFYDIDSGQIIIDGTPIKEVTREAVHDQFSMVLQDTWLFEGTVKENLIYNQ
CDITDEQVVAAAKAVGVDHFINTLPNGYDSVLKDADELSVGERQLLTIARALLKNAPMLILDEATSSVDTRTEELIQKAM
DKLMEGRTSFVIAHRLSTIKNADLILVMKDGDIIESGNHEALLAQGGFYADLYNSQFESVA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=1089281 ACLSIV_RS02170 WP_172506946.1 430658..432523(+) (rcrQ) [Lactococcus raffinolactis strain GCULR]
ATGCCGACAACAAAAAATACACCTAAAAAATCTAATGGCGGTGGCTTTGGACCAGGTCGTGGCTTAGGTCGCGGAGGTGA
AAAACCCAAAGACGTCAAAAAAGCCTTGGGCGACTTAGCGAAATATGTCAAACCTTGGTATCCGGCGATTCTTGTCGCAG
CCATCGCTGCCTGTGGTGGTGCTTATCTGACCATTATCGGTCCTGATCGCCTATCTGAAATTACTAATAAAATCATGGCT
GGTTTGAGAGCCAGCTTCATCCCCAAAGGCATGCCAGGTCATGGCGACATTGATATGAAAGCCATTACGGCGATTGGTGT
GACTTTGATTGCCTTCTACTTGGGTTCAGCGCTTTTGAGTTACACCCAAGGTTTCATCATGGCGACTGTAACCCAACGGA
CATCTAAGAAACTACGTCAAGATATTTCGACGAAAATTAACAAATTACCTTTGCGCTACTTTGATAGTCATCCTTATGGC
GATACTTTGTCGCGCGTGACAAATGACGTGGATGCGATCAGCCAAGCCCTTAACCAATCCGTTGGGAGTTTGGTTTCAGC
CTTGACGCTCTTCTTTGGCACGATCATCATGATGTTTAAAACCAACGTTGAAATGAGTCTGACTGCTATTGCCACAACGG
CGATCGGCTTTGGCTTAATGATGCTCATCATGACTAAGTCACAAAGATTCTTTAACGCCCAACAAAACGGCCTCGGCGAG
GTTAATGGTTTTGTGGAAGAAGTTTACACGGGTCATAATATCGTGAGAGTGTCCAATGCGGACAAGTCTAAACAAGATGA
GTTCGATGAAATCAATGAACGCCTTTATAACTCAGTTTGGAAATCTCAATTTCTGTCAGGTTTGATGATGCCACTCATGC
AATTCATCGGTAACTTTGGTTACGGTGCTGTCTGTTTGGTTGGGGCGATTTTAGCCATCTATGGTAAAATCGAGTTTGGC
GTGATCGTAGCCTTCATGATTTATATTCGTTTGTTCACCCAACCCTTGACACAAATCGCCCAAGCGGTGACCTCAATGCA
ATCAGCAGGCGCAGCTTCTGAGCGGATTTTCACATTCCTTGCGGAACCTGAATTAGAAGACGAAACGGGTAAGGCAACGA
CATTGGTCAACCCTAAAGGGGCTGTTGAATTTAAAAACGTTCATTTCGGCTATAACGCTGATCGTGTCATCATCAATGAC
TTCTCAGCCAAAGCTGAACCTGGTCAGAAGATTGCCATCGTTGGGCCTACGGGCGCTGGTAAATCAACCATGGTCAACTT
GCTCATGCGTTTCTACGATATTGATTCTGGTCAAATCATCATTGATGGGACACCGATTAAAGAGGTGACGCGTGAAGCGG
TCCACGATCAGTTTTCAATGGTCTTACAAGACACGTGGTTGTTTGAAGGGACAGTGAAAGAAAACTTGATCTATAATCAA
TGTGATATCACGGATGAACAGGTTGTTGCTGCTGCTAAGGCAGTTGGTGTCGATCATTTTATCAATACCTTACCAAATGG
CTATGACTCAGTCTTGAAAGACGCTGATGAATTATCAGTTGGTGAACGTCAGCTCTTAACCATTGCCCGTGCGCTCTTGA
AAAATGCACCAATGTTGATTCTTGATGAAGCGACATCATCAGTAGATACGCGGACTGAAGAATTGATCCAAAAAGCCATG
GATAAACTCATGGAAGGTCGGACAAGTTTTGTCATTGCCCACAGACTGTCTACCATCAAAAATGCTGACTTGATTCTCGT
CATGAAAGACGGCGATATCATCGAAAGTGGCAACCACGAAGCCTTGCTTGCACAAGGTGGCTTCTATGCTGATTTGTACA
ATTCACAGTTTGAAAGCGTGGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(82-336)

ABC transporter (ABC_tran)

(399-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.508

95.008

0.575

Multiple sequence alignment