Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACLSIV_RS02165 Genome accession   NZ_CP178385
Coordinates   428886..430658 (+) Length   590 a.a.
NCBI ID   WP_172506947.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain GCULR     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 423886..435658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSIV_RS02145 (ACLSIV_02145) - 424729..425697 (+) 969 WP_167841039.1 ABC transporter permease -
  ACLSIV_RS02150 (ACLSIV_02150) - 425748..426776 (+) 1029 WP_167841040.1 sugar ABC transporter substrate-binding protein -
  ACLSIV_RS02155 (ACLSIV_02155) - 427019..428209 (+) 1191 WP_172506948.1 iron-containing alcohol dehydrogenase -
  ACLSIV_RS02160 (ACLSIV_02160) - 428360..428815 (+) 456 WP_096039973.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLSIV_RS02165 (ACLSIV_02165) rcrP 428886..430658 (+) 1773 WP_172506947.1 ABC transporter ATP-binding protein Regulator
  ACLSIV_RS02170 (ACLSIV_02170) rcrQ 430658..432523 (+) 1866 WP_172506946.1 ABC transporter ATP-binding protein Regulator
  ACLSIV_RS02175 (ACLSIV_02175) - 432646..433404 (+) 759 WP_167839714.1 tyrosine-protein phosphatase -
  ACLSIV_RS02180 (ACLSIV_02180) - 433678..434085 (+) 408 WP_167839715.1 hypothetical protein -
  ACLSIV_RS02185 (ACLSIV_02185) - 434150..434506 (+) 357 WP_061773765.1 hypothetical protein -
  ACLSIV_RS02190 (ACLSIV_02190) - 434532..434897 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64919.47 Da        Isoelectric Point: 9.0892

>NTDB_id=1089280 ACLSIV_RS02165 WP_172506947.1 428886..430658(+) (rcrP) [Lactococcus raffinolactis strain GCULR]
MFKILKKITGKELRYVGISLIFIVIQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDEGRWMVLCAFGSLVAAVIVGFFAA
KVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMIVAMGLQLSIKAPITAVWAIMKIANKSWEWTTA
LGAAVLFLLVMISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIRVVRAYNAQKYQTDKFEKANDDITSTNLFIQRAMAF
MMPMMSLVSSGLSVAVYLIGATIIKAASVGTPANSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMFPRANVSAGRINE
VIDTASSIKNGTKDGSAAKEVGTVEFKNVYFQYADASEHVLEGVSFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKEYTEEALHDKMGFIPQKPVMFNGTIRSNLAFGTNAHGDMSDEDLMAAARIAQAEEFILKNPESLNAEVSQ
GGLNLSGGQKQRLAIARAIARKPEILVFDDSFSALDYKTDRVLRDTLKRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGRGTHDELMASNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=1089280 ACLSIV_RS02165 WP_172506947.1 428886..430658(+) (rcrP) [Lactococcus raffinolactis strain GCULR]
ATGTTTAAAATCTTAAAAAAAATCACTGGAAAAGAGCTCAGATACGTCGGTATCAGCCTGATTTTCATTGTCATCCAGGT
GTATTTAGACCTTAAATTACCGGATTACATGAGCAAAGTGACCAAATTAATCCAAGAAAAAGGCACAACCGTGTCGCAAA
TCTTTGATGAAGGTCGCTGGATGGTCCTCTGTGCCTTTGGCTCACTCGTCGCCGCAGTCATTGTCGGCTTCTTTGCTGCC
AAGGTAGCCGCTGGCTTATCACGGACGCTGCGTCATGATGTCTACCATCAAGTCTCAGAGTATTCAATGGCTGAAATCAA
CCAGTTTTCAACTGCCAGCCTGATTACCCGTTCAACCAACGACATTACCCAAGTCCAAATGATCGTGGCTATGGGGCTAC
AACTCAGTATCAAAGCTCCGATCACTGCCGTTTGGGCCATCATGAAAATTGCCAACAAATCATGGGAATGGACGACCGCT
TTAGGTGCTGCTGTTCTCTTCCTTCTCGTCATGATCAGTATTATCGTGACGCTTGCCATGCCTCGTTTCAAGATTATCCA
AAAATTAACGGATAAACTAAATTCCGTGACCCGTGAAAACCTGACTGGGATTCGTGTGGTCCGTGCTTATAACGCTCAAA
AATATCAAACCGATAAATTTGAAAAAGCCAACGACGATATTACGTCAACCAACCTCTTCATTCAACGCGCTATGGCCTTC
ATGATGCCCATGATGTCTCTTGTGTCATCTGGCCTGTCAGTTGCCGTTTACTTGATTGGTGCGACCATTATTAAAGCTGC
AAGCGTTGGGACACCTGCTAATTCACCTCGGATCAATCTCTTTTCAGACATGGTCGTGTTCACGTCTTATGGAATGCAAG
TTGTGATGGCCTTTATGATGTTGACCATGATTTTCATCATGTTCCCGCGTGCCAATGTCTCTGCTGGTCGGATTAATGAA
GTCATCGATACCGCCTCAAGCATTAAAAACGGGACAAAAGATGGTTCAGCAGCTAAAGAAGTTGGGACTGTCGAGTTTAA
GAACGTCTATTTCCAATACGCTGATGCCTCTGAACACGTTCTTGAAGGTGTTTCTTTCAAGGCCAATAAAGGCGAAACGG
TTGCCTTCATCGGCTCAACCGGTTCTGGTAAATCAACATTAATCAACCTCATCCCGCGTTACTATGATGTGACAGCCGGT
CAAGTCTTGGTTGATGGCGTCAATGTTAAGGAATATACAGAAGAAGCCTTGCACGATAAAATGGGCTTCATCCCGCAAAA
ACCAGTGATGTTTAACGGAACGATTCGGTCAAACTTGGCCTTTGGGACTAATGCTCATGGTGACATGAGTGATGAAGACT
TAATGGCAGCTGCACGGATCGCCCAAGCTGAAGAATTTATACTGAAAAACCCTGAAAGCTTAAACGCTGAAGTATCTCAG
GGTGGTCTTAACCTGTCCGGTGGTCAAAAGCAACGGCTAGCGATTGCTCGTGCCATTGCCCGCAAGCCTGAAATTCTCGT
CTTTGATGACAGTTTTTCAGCTTTGGACTATAAGACTGACCGTGTCTTACGCGATACCTTGAAACGTGAAACAGCAGAAA
CGACGAAACTGATTGTTGCCCAACGGATTGGCACGATTATCGATGCCGATCAAATTATTGTTTTGGATAAAGGGAAAGTC
GTGGGTCGTGGGACACATGATGAGTTGATGGCTAGCAATGAAGTCTATCAAGAAATCGCCTATTCACAACTGTCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-511)

ABC transporter transmembrane region (ABC_membrane)

(17-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.017

100

0.558

Multiple sequence alignment