Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ACLSIV_RS01320 Genome accession   NZ_CP178385
Coordinates   242418..243476 (+) Length   352 a.a.
NCBI ID   WP_061773607.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain GCULR     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 237418..248476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSIV_RS01305 (ACLSIV_01305) rsmD 240962..241528 (+) 567 WP_061773604.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACLSIV_RS01310 (ACLSIV_01310) - 241491..241952 (+) 462 WP_061773605.1 ASCH domain-containing protein -
  ACLSIV_RS01315 (ACLSIV_01315) coaD 241949..242431 (+) 483 WP_061773606.1 pantetheine-phosphate adenylyltransferase -
  ACLSIV_RS01320 (ACLSIV_01320) sepM 242418..243476 (+) 1059 WP_061773607.1 SepM family pheromone-processing serine protease Regulator
  ACLSIV_RS01325 (ACLSIV_01325) - 243751..244992 (+) 1242 WP_412921750.1 hypothetical protein -
  ACLSIV_RS01330 (ACLSIV_01330) - 245299..246012 (+) 714 WP_061773609.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38056.94 Da        Isoelectric Point: 9.4237

>NTDB_id=1089276 ACLSIV_RS01320 WP_061773607.1 242418..243476(+) (sepM) [Lactococcus raffinolactis strain GCULR]
MIKSKKSFIKKRWAIASLVGILVFLGVLLPLPYYVEMPGTTENVGEMIKVNQTPLHQKSEEGALNLTTVSMMRATGASLI
YAALTDFTDVYSKKDMMGNQTDADYNRMNAFYMASAQNAATYEAFKLAGKPFELDYKGVYVLDVLKKSTFKDVLHIADTV
TGVNGQSFKSSEELMTYIKSQKIGAKISVQYTDEAGKAKSADGKTIKIADGKAGIGITLVDHTEVKSTPSVTIDAGAIGG
PSAGMMFTLEIYSQLTGQDLTKGREIAGTGTIEKDGKIGRIGGIDKKIATASRNGAQIFLAPDDEITPEMKKVEPGVKSN
YQEALAAAKKLNTKMKIVPVKTVQDAIDYLKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1089276 ACLSIV_RS01320 WP_061773607.1 242418..243476(+) (sepM) [Lactococcus raffinolactis strain GCULR]
TTGATCAAAAGTAAAAAGTCATTTATAAAAAAACGCTGGGCTATTGCTAGTCTTGTTGGTATCCTAGTTTTTCTTGGTGT
TTTGCTCCCCCTACCCTACTATGTTGAGATGCCTGGCACGACTGAAAATGTTGGTGAGATGATAAAAGTCAATCAGACAC
CATTGCACCAAAAATCAGAAGAAGGGGCTTTGAATTTGACGACTGTTTCGATGATGCGGGCAACGGGTGCGAGCTTGATT
TATGCTGCATTGACGGACTTTACCGATGTTTACAGTAAAAAAGACATGATGGGTAACCAGACGGATGCTGATTACAATCG
GATGAATGCTTTTTACATGGCAAGTGCTCAGAATGCTGCAACCTACGAGGCATTTAAGTTGGCGGGGAAACCCTTTGAGT
TAGATTATAAAGGTGTTTATGTCCTGGATGTGCTGAAGAAATCGACGTTTAAAGATGTTTTGCATATCGCGGATACAGTG
ACAGGTGTCAATGGGCAAAGTTTTAAATCATCTGAGGAGCTGATGACCTACATCAAGTCCCAAAAGATTGGGGCTAAGAT
TTCAGTTCAGTATACAGATGAAGCGGGTAAGGCAAAATCGGCAGACGGCAAAACGATTAAGATCGCAGATGGTAAAGCTG
GAATTGGGATTACCTTGGTGGATCATACGGAGGTTAAGAGTACGCCATCTGTGACAATTGATGCGGGGGCGATTGGTGGC
CCATCTGCAGGGATGATGTTTACGCTTGAAATCTATTCCCAATTGACGGGCCAAGATTTAACGAAAGGTCGGGAGATTGC
GGGTACAGGTACGATTGAAAAAGATGGGAAAATCGGTCGAATTGGCGGTATTGATAAAAAAATCGCCACTGCCAGTCGCA
ATGGTGCTCAAATTTTTCTAGCGCCTGATGATGAGATAACCCCAGAGATGAAGAAAGTCGAGCCTGGTGTTAAGTCAAAC
TATCAAGAAGCATTGGCTGCAGCTAAAAAACTGAATACAAAGATGAAAATTGTCCCAGTGAAAACAGTGCAGGATGCAAT
TGACTATTTGAAAGAATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-321)

PDZ domain (PDZ_2)

(134-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

50.997

99.716

0.509

Multiple sequence alignment