Detailed information NTG1089258

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: ACL0VS_RS04800
• Genome accession: NZ_CP178384
• Coordinates: 1101812..1102465 (+)
• Length: 217 a.a.
• NCBI ID: WP_101239520.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. PMSZPI
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1096812..1107465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL0VS_RS04790 (ACL0VS_04790)	aceB	1097908..1099482 (-)	1575	WP_101239522.1	malate synthase A	-
ACL0VS_RS04795 (ACL0VS_04795)	-	1099609..1101087 (+)	1479	WP_101239521.1	helix-turn-helix domain-containing protein	-
ACL0VS_RS04800 (ACL0VS_04800)	comF	1101812..1102465 (+)	654	WP_101239520.1	ComF family protein	Machinery gene
ACL0VS_RS04805 (ACL0VS_04805)	-	1102593..1103279 (+)	687	WP_101239519.1	alpha/beta fold hydrolase	-
ACL0VS_RS04810 (ACL0VS_04810)	upp	1103281..1103931 (-)	651	WP_101239518.1	uracil phosphoribosyltransferase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25362.41 Da
• Isoelectric Point: 8.8442

>NTDB_id=1089258 ACL0VS_RS04800 WP_101239520.1 1101812..1102465(+) (comF) [Chryseobacterium sp. PMSZPI]
MMLDLLFPNRCLHCNKIIEPDLLVCNLCFSQIHFTHYDYFTNNPIKEKCRLAFPVENTYALLQFEKESLSRKIIHELKYR
GREKTGRVLAEWITDRLDFKDQKPDLMVSVPLHPKKLRERGYNQLHVFTETLSAYYGIPFDHELIKRNNYSKAQALKDKQ
HRLESDKTFSLNKSVSGKHILLIDDVFTTGNTVSSIAWEILKTGNNKVSILVMAMDL

Nucleotide

• Length: 654 bp

>NTDB_id=1089258 ACL0VS_RS04800 WP_101239520.1 1101812..1102465(+) (comF) [Chryseobacterium sp. PMSZPI]
ATGATGCTAGACTTGCTTTTTCCCAATCGTTGCCTACACTGCAACAAAATTATCGAACCCGATTTACTGGTATGTAACCT
GTGTTTTAGTCAAATTCATTTTACTCATTACGATTATTTCACTAATAACCCTATTAAAGAAAAATGCAGATTAGCCTTTC
CTGTGGAGAATACCTATGCTTTGCTACAGTTCGAGAAAGAAAGTTTAAGCAGAAAAATTATTCACGAGCTCAAATACAGA
GGTAGAGAAAAAACGGGAAGAGTACTTGCAGAATGGATTACCGACCGTTTAGATTTTAAAGATCAAAAGCCTGATCTTAT
GGTAAGTGTTCCATTGCATCCAAAGAAATTAAGAGAAAGAGGATACAACCAGCTTCATGTATTTACGGAAACACTGTCAG
CATATTACGGAATCCCATTTGATCATGAATTAATTAAAAGAAACAATTACTCAAAAGCACAGGCTTTAAAAGATAAACAA
CACCGGCTTGAATCCGACAAAACATTCTCTCTCAACAAATCCGTTAGCGGAAAGCATATTCTTTTGATTGATGATGTTTT
CACAACTGGGAATACGGTCTCATCAATTGCCTGGGAAATTTTAAAAACGGGAAATAACAAAGTGAGTATACTGGTAATGG
CTATGGATTTATAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	51.389	99.539	0.512