Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GT95_RS05480 Genome accession   NZ_CP008813
Coordinates   1038305..1039375 (-) Length   356 a.a.
NCBI ID   WP_000817926.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain C001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1033305..1044375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT95_RS05460 (GT95_05290) - 1033840..1034592 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  GT95_RS05465 (GT95_05295) - 1034594..1036549 (+) 1956 WP_000499554.1 FtsX-like permease family protein -
  GT95_RS05470 (GT95_05300) braR 1036659..1037327 (+) 669 WP_000076365.1 response regulator transcription factor Regulator
  GT95_RS05475 (GT95_05305) - 1037324..1038262 (+) 939 WP_000620977.1 sensor histidine kinase -
  GT95_RS05480 (GT95_05310) xerS 1038305..1039375 (-) 1071 WP_000817926.1 tyrosine recombinase XerS Machinery gene
  GT95_RS05485 (GT95_05315) - 1039827..1041488 (+) 1662 WP_000093971.1 peptide ABC transporter substrate-binding protein -
  GT95_RS05490 (GT95_05320) - 1041521..1042294 (-) 774 WP_000622403.1 DUF3307 domain-containing protein -
  GT95_RS05495 (GT95_05325) - 1042284..1042970 (-) 687 WP_000280308.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41408.61 Da        Isoelectric Point: 9.4625

>NTDB_id=108920 GT95_RS05480 WP_000817926.1 1038305..1039375(-) (xerS) [Streptococcus agalactiae strain C001]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKLSTKKKKETLASRAENIKQK
LFLGNETIEFLEYINCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=108920 GT95_RS05480 WP_000817926.1 1038305..1039375(-) (xerS) [Streptococcus agalactiae strain C001]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTTTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCATATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAACTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAAATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGTCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGACAAACTCTAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment