Detailed information NTG1089186

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACLNGX_RS17915
• Genome accession: NZ_CP178374
• Coordinates: 3667151..3668296 (+)
• Length: 381 a.a.
• NCBI ID: WP_101562519.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 2023
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3662151..3673296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLNGX_RS17895 (ACLNGX_17895)	-	3663048..3663476 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
ACLNGX_RS17900 (ACLNGX_17900)	-	3663630..3664142 (+)	513	Protein_3465	bacteriocin biosynthesis protein AlbG	-
ACLNGX_RS17905 (ACLNGX_17905)	-	3664149..3665525 (-)	1377	WP_166705900.1	YncE family protein	-
ACLNGX_RS17910 (ACLNGX_17910)	-	3665565..3666920 (-)	1356	WP_071392426.1	YncE family protein	-
ACLNGX_RS17915 (ACLNGX_17915)	rapF	3667151..3668296 (+)	1146	WP_101562519.1	Rap family tetratricopeptide repeat protein	Regulator
ACLNGX_RS17920 (ACLNGX_17920)	-	3668280..3668399 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ACLNGX_RS17925 (ACLNGX_17925)	speB	3668522..3669394 (-)	873	WP_003151054.1	agmatinase	-
ACLNGX_RS17930 (ACLNGX_17930)	speE	3669454..3670284 (-)	831	WP_003151052.1	spermidine synthase	-
ACLNGX_RS17935 (ACLNGX_17935)	-	3670484..3672556 (+)	2073	WP_412838421.1	transglycosylase domain-containing protein	-
ACLNGX_RS17940 (ACLNGX_17940)	-	3672581..3673012 (-)	432	WP_069473626.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45795.29 Da
• Isoelectric Point: 4.9327

>NTDB_id=1089186 ACLNGX_RS17915 WP_101562519.1 3667151..3668296(+) (rapF) [Bacillus velezensis strain 2023]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDILI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1089186 ACLNGX_RS17915 WP_101562519.1 3667151..3668296(+) (rapF) [Bacillus velezensis strain 2023]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAATACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTTGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAGAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCACAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTGTATATGCCGGATCCAAGAGATATATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-254)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.604	100	0.706
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533