Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACLNGX_RS00250 Genome accession   NZ_CP178374
Coordinates   45601..45891 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain 2023     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40601..50891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLNGX_RS00210 (ACLNGX_00210) darA 40619..40948 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  ACLNGX_RS00215 (ACLNGX_00215) - 40961..41401 (+) 441 WP_029974647.1 YaaR family protein -
  ACLNGX_RS00220 (ACLNGX_00220) holB 41413..42402 (+) 990 WP_128574753.1 DNA polymerase III subunit delta' -
  ACLNGX_RS00225 (ACLNGX_00225) ricT 42405..43232 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  ACLNGX_RS00230 (ACLNGX_00230) yabA 43247..43606 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  ACLNGX_RS00235 (ACLNGX_00235) - 43666..44409 (+) 744 WP_029974652.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACLNGX_RS00240 (ACLNGX_00240) - 44396..44695 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  ACLNGX_RS00245 (ACLNGX_00245) rsmI 44670..45551 (+) 882 WP_025854083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACLNGX_RS00250 (ACLNGX_00250) abrB 45601..45891 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  ACLNGX_RS00255 (ACLNGX_00255) metG 46374..48365 (+) 1992 WP_053573816.1 methionine--tRNA ligase -
  ACLNGX_RS00260 (ACLNGX_00260) - 48441..49208 (+) 768 WP_032868379.1 TatD family hydrolase -
  ACLNGX_RS00265 (ACLNGX_00265) - 49343..50668 (+) 1326 WP_166705761.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=1089117 ACLNGX_RS00250 WP_169510469.1 45601..45891(-) (abrB) [Bacillus velezensis strain 2023]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1089117 ACLNGX_RS00250 WP_169510469.1 45601..45891(-) (abrB) [Bacillus velezensis strain 2023]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment