Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PDN68_RS02245 Genome accession   NZ_CP178358
Coordinates   551620..552987 (+) Length   455 a.a.
NCBI ID   WP_005810649.1    Uniprot ID   -
Organism   Bacteroides hominis strain Tbg-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 546620..557987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDN68_RS02230 (PDN68_002230) - 547028..547981 (+) 954 WP_005810643.1 polysaccharide biosynthesis/export family protein -
  PDN68_RS02235 (PDN68_002235) - 548000..550294 (+) 2295 WP_032531727.1 GumC family protein -
  PDN68_RS02240 (PDN68_002240) - 550389..550796 (-) 408 WP_032543351.1 BT0820 family HAD-type phosphatase -
  PDN68_RS02245 (PDN68_002245) radA 551620..552987 (+) 1368 WP_005810649.1 DNA repair protein RadA Machinery gene
  PDN68_RS02250 (PDN68_002250) - 553043..553417 (+) 375 WP_005778635.1 GxxExxY protein -
  PDN68_RS02255 (PDN68_002255) - 553461..555050 (+) 1590 WP_032538157.1 NAD(P)/FAD-dependent oxidoreductase -
  PDN68_RS02260 (PDN68_002260) - 555059..555658 (+) 600 WP_032531771.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50199.95 Da        Isoelectric Point: 6.1360

>NTDB_id=1089071 PDN68_RS02245 WP_005810649.1 551620..552987(+) (radA) [Bacteroides hominis strain Tbg-12]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKEVPNKRPVSGIESPKAKPVTLNEIEADEEPRIDMHDEELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLHMPERRILYISGEESARQLKLRADRLTQTSSDCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDMKKLKIELVPVRKVEEAFRGLFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1089071 PDN68_RS02245 WP_005810649.1 551620..552987(+) (radA) [Bacteroides hominis strain Tbg-12]
ATGGCAAAAGAGAAAACCGTTTATGTATGCAGTAACTGCGGACAGGAATCACCCAAATGGGTGGGCAAGTGTCCTTCGTG
TGGCGAGTGGAATACTTATGTAGAAGAAATCGTACGCAAGGAGGTTCCGAATAAACGTCCGGTATCGGGCATCGAATCGC
CTAAAGCCAAACCTGTCACCCTGAACGAGATCGAAGCGGACGAGGAACCCCGCATCGACATGCACGACGAGGAGTTGAAC
CGGGTACTGGGCGGCGGACTGGTGCCGGGATCACTGGTGCTGATCGGTGGCGAACCGGGTATCGGAAAATCGACTCTGGT
ACTTCAAACCGTGCTCCACATGCCCGAACGCAGGATACTCTACATCTCCGGAGAAGAGAGTGCAAGGCAACTGAAGCTCC
GCGCGGACCGACTGACACAAACGTCGAGCGACTGCCTGATTGTGTGCGAAACGTCGTTGGAGCAGATCTATGTGCACATT
AAGAATACACGTCCGGATCTGGTAATCATCGACTCCATACAGACCATATCCACCGAAAGCATCGAGTCTTCGCCGGGAAG
TATCGCGCAAGTGCGGGAGTGCTCGGCCTCCATTCTCCGTTTTGCCAAAGAGACGCATACTCCGGTATTACTGATCGGGC
ATATCAACAAAGAAGGCAGCATTGCCGGTCCGAAGGTACTGGAACACATCGTAGACACCGTGCTCCAGTTTGAGGGGGAC
CAGCATTATATGTACCGTATCCTGCGCAGCATCAAGAACCGCTTTGGCAGTACGGCCGAACTGGGTATTTACGAGATGCG
GCAAGACGGGCTTCGCCAGGTCAGCAACCCATCGGAGCTGTTGCTGTCGCAAGATCACGAAGGCATGAGCGGGGTAGCCA
TCGCATCTGCCATCGAAGGAGTCAGGCCGTTCCTGATAGAAACACAGGCACTTGTCAGTTCTGCCGTTTACGGCAATCCG
CAACGTTCGGCAACCGGATTCGATATCCGCCGCATGAACATGCTGCTGGCTGTGCTCGAGAAACGTGTCGGCTTCAAGTT
AGCACAGAAAGATGTCTTTCTAAATATTGCCGGGGGGCTGAAGGTGAACGACCCTGCCATCGACCTGGCTGTTATCAGTG
CCATCCTTTCGTCCAATATGGATGCCGCCATCGAACCGGAAGTCTGTATGGCAGGTGAAATCGGGTTGTCCGGTGAAATC
CGTCCGGTAAACCGAATCGAACAACGTATCGGTGAAGCCGAGAAGCTTGGATTCAAACGGTTTATCCTGCCTAAGTATAA
TATGCAGGGAATCGACATGAAGAAGCTGAAGATAGAACTGGTGCCGGTGAGAAAGGTGGAAGAGGCGTTCCGGGGACTCT
TCGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.528

100

0.519
  radA Streptococcus pneumoniae Rx1

48.352

100

0.484
  radA Streptococcus pneumoniae D39

48.352

100

0.484
  radA Streptococcus pneumoniae R6

48.352

100

0.484
  radA Streptococcus pneumoniae TIGR4

48.352

100

0.484
  radA Streptococcus mitis NCTC 12261

48.352

100

0.484
  radA Streptococcus mitis SK321

48.132

100

0.481

Multiple sequence alignment