Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ACI766_RS24595 Genome accession   NZ_CP178323
Coordinates   5262992..5263549 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas sp. DL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5257992..5268549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI766_RS24575 pilR 5259268..5260605 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  ACI766_RS24580 thiO 5260651..5261745 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  ACI766_RS24585 - 5261880..5262389 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  ACI766_RS24590 - 5262495..5263001 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  ACI766_RS24595 pilV 5262992..5263549 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  ACI766_RS24600 pilW 5263546..5264370 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  ACI766_RS24605 pilX 5264367..5264954 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  ACI766_RS24610 pilY1 5264966..5268457 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=1088826 ACI766_RS24595 WP_003119423.1 5262992..5263549(+) (pilV) [Pseudomonas sp. DL]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1088826 ACI766_RS24595 WP_003119423.1 5262992..5263549(+) (pilV) [Pseudomonas sp. DL]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995

Multiple sequence alignment