Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   ACLUR8_RS01450 Genome accession   NZ_CP178253
Coordinates   314489..315016 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain A118     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 309489..320016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLUR8_RS01435 (ACLUR8_01435) pilM 312042..313100 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACLUR8_RS01440 (ACLUR8_01440) pilN 313100..313741 (+) 642 WP_118978219.1 PilN domain-containing protein Machinery gene
  ACLUR8_RS01445 (ACLUR8_01445) pilO 313738..314478 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLUR8_RS01450 (ACLUR8_01450) pilP 314489..315016 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACLUR8_RS01455 (ACLUR8_01455) pilQ 315079..317244 (+) 2166 WP_031993779.1 type IV pilus secretin PilQ Machinery gene
  ACLUR8_RS01460 (ACLUR8_01460) aroK 317256..317825 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ACLUR8_RS01465 (ACLUR8_01465) aroB 317854..318936 (+) 1083 WP_168726692.1 3-dehydroquinate synthase -
  ACLUR8_RS01470 (ACLUR8_01470) - 318952..319827 (+) 876 WP_168726693.1 hypothetical protein -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=1088754 ACLUR8_RS01450 WP_000695065.1 314489..315016(+) (pilP) [Acinetobacter baumannii strain A118]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1088754 ACLUR8_RS01450 WP_000695065.1 314489..315016(+) (pilP) [Acinetobacter baumannii strain A118]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1

  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714


Multiple sequence alignment