Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACLUR6_RS01565 Genome accession   NZ_CP178250
Coordinates   339530..340531 (+) Length   333 a.a.
NCBI ID   WP_000079197.1    Uniprot ID   A0A009TMX3
Organism   Acinetobacter baumannii strain ACI     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334530..345531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLUR6_RS01535 (ACLUR6_01535) - 336111..336240 (-) 130 Protein_293 hypothetical protein -
  ACLUR6_RS01540 (ACLUR6_01540) rpoZ 336279..336557 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACLUR6_RS01545 (ACLUR6_01545) gmk 336630..337259 (-) 630 WP_000015937.1 guanylate kinase -
  ACLUR6_RS01550 (ACLUR6_01550) ispH 337382..338332 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACLUR6_RS01555 (ACLUR6_01555) fimU 338502..338975 (+) 474 WP_168726697.1 pilus assembly FimT family protein Machinery gene
  ACLUR6_RS01560 (ACLUR6_01560) pilV 338969..339529 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACLUR6_RS01565 (ACLUR6_01565) pilW 339530..340531 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ACLUR6_RS01570 (ACLUR6_01570) pilX 340528..341346 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACLUR6_RS01575 (ACLUR6_01575) pilY1 341358..345212 (+) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35803.50 Da        Isoelectric Point: 6.1010

>NTDB_id=1088684 ACLUR6_RS01565 WP_000079197.1 339530..340531(+) (pilW) [Acinetobacter baumannii strain ACI]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1088684 ACLUR6_RS01565 WP_000079197.1 339530..340531(+) (pilW) [Acinetobacter baumannii strain ACI]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACTTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TMX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment