Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFCT9_RS10990 Genome accession   NZ_CP178241
Coordinates   2279703..2281073 (+) Length   456 a.a.
NCBI ID   WP_412519267.1    Uniprot ID   -
Organism   Staphylococcus simulans strain PFJB-50N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2274703..2286073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCT9_RS10970 - 2274945..2275406 (+) 462 WP_412519263.1 CtsR family transcriptional regulator -
  ACFCT9_RS10975 - 2275526..2275930 (+) 405 Protein_2114 UvrB/UvrC motif-containing protein -
  ACFCT9_RS10980 - 2275934..2276938 (+) 1005 WP_412519265.1 protein arginine kinase -
  ACFCT9_RS10985 - 2276950..2279415 (+) 2466 WP_412519266.1 ATP-dependent Clp protease ATP-binding subunit -
  ACFCT9_RS10990 radA 2279703..2281073 (+) 1371 WP_412519267.1 DNA repair protein RadA Machinery gene
  ACFCT9_RS10995 - 2281101..2282165 (+) 1065 WP_412519268.1 PIN/TRAM domain-containing protein -
  ACFCT9_RS11000 gltX 2282452..2283906 (+) 1455 WP_412519269.1 glutamate--tRNA ligase -
  ACFCT9_RS11005 cysE 2284204..2284833 (+) 630 WP_412521669.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50238.79 Da        Isoelectric Point: 7.4600

>NTDB_id=1088631 ACFCT9_RS10990 WP_412519267.1 2279703..2281073(+) (radA) [Staphylococcus simulans strain PFJB-50N]
MAKKKVTFECMACGYQSPKWMGKCPNCGAWNQMEEVMTQKEAPSGRGMRTREQTAKVTKLNDVQHESTPRIHTSSKEFDR
VLGGGIVQGSLVLIGGDPGIGKSTLLLQICSALSQNKKLLYITGEESLNQTKLRADRLEEDSSQLNVFAETDLEVIKEAV
KQTQPDLVVVDSIQTVYHPEISSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLEERSTNVAGSTIVPTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLNLLMAVLEKKESYLLQQQDAYVKVAGGVRLTEPAVDLAIIAAVASSFKDQPINGMDCFVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWDFPDNIQVIGVTSVHEALNFALMKS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1088631 ACFCT9_RS10990 WP_412519267.1 2279703..2281073(+) (radA) [Staphylococcus simulans strain PFJB-50N]
TTGGCAAAAAAGAAAGTGACATTTGAATGTATGGCATGTGGTTACCAATCGCCGAAATGGATGGGTAAATGTCCTAATTG
TGGTGCTTGGAACCAAATGGAAGAAGTTATGACGCAAAAAGAAGCGCCAAGTGGCAGAGGGATGCGTACAAGAGAACAAA
CCGCTAAAGTAACAAAATTAAATGATGTCCAACATGAATCTACACCGCGTATTCATACAAGTTCTAAAGAATTTGATCGC
GTGCTAGGCGGCGGTATTGTCCAAGGTTCACTCGTGTTAATCGGCGGGGACCCAGGGATTGGGAAATCGACTTTGTTACT
TCAAATTTGTTCAGCGTTATCCCAAAATAAAAAGTTACTTTATATTACGGGTGAGGAATCACTGAATCAAACGAAATTAC
GTGCCGATCGTTTAGAAGAAGACTCTAGTCAATTGAATGTATTTGCGGAAACAGATTTAGAAGTGATTAAAGAAGCAGTC
AAACAAACACAACCGGACTTGGTTGTTGTGGACTCTATTCAAACAGTCTATCATCCAGAAATCAGTTCAGCACCGGGATC
TGTTTCACAAGTACGTGAAAGTACGCAAATTTTAATGGGCATTGCGAAACAAATGAATATCGCAACCTTCATCGTGGGGC
ACGTAACAAAAGAAGGTCAAATTGCGGGTCCACGTTTACTTGAACATATGGTAGATACGGTTTTGTATTTTGAAGGCGAT
GAACATCATGCATACAGAATTTTGCGTGCAGTGAAGAACCGTTTCGGTTCTACGAATGAAATGGGCATCTTTGAAATGAA
ACATAGCGGCTTAAAAGGGGTTAAAAACCCGTCAGAGATGTTCTTAGAAGAACGTTCAACCAATGTGGCAGGTTCTACTA
TTGTACCGACGATGGAAGGCACACGTCCATTACTAATTGAAGTACAAGCTTTAGTGACACCGACAACGTTTAACAACCCA
AGACGTATGGCAACTGGTATTGATCATAACCGCTTAAATTTATTAATGGCAGTGTTAGAAAAGAAAGAAAGTTACTTGTT
GCAGCAACAAGATGCGTATGTCAAAGTCGCAGGCGGTGTTCGTTTAACTGAACCGGCGGTTGATTTAGCCATTATTGCAG
CAGTAGCTTCTAGTTTTAAAGACCAACCGATTAATGGCATGGACTGTTTTGTTGGTGAAGTTGGTTTAACAGGTGAAGTT
CGACGTGTCTCACGTATTGAACAGCGTGTGCAAGAAGCAGCGAAATTAGGGTTCAAACGTGTGATCATTCCTAAAACCAA
TATAGGAGGTTGGGACTTCCCGGATAATATTCAAGTTATCGGTGTAACAAGTGTACACGAAGCGTTGAATTTCGCATTGA
TGAAAAGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.646

100

0.658
  radA Streptococcus pneumoniae Rx1

60.579

98.465

0.596
  radA Streptococcus pneumoniae D39

60.579

98.465

0.596
  radA Streptococcus pneumoniae R6

60.579

98.465

0.596
  radA Streptococcus pneumoniae TIGR4

60.579

98.465

0.596
  radA Streptococcus mitis NCTC 12261

60.579

98.465

0.596
  radA Streptococcus mitis SK321

60.579

98.465

0.596

Multiple sequence alignment