Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ACFCT9_RS05545 Genome accession   NZ_CP178241
Coordinates   1102125..1102841 (+) Length   238 a.a.
NCBI ID   WP_412521432.1    Uniprot ID   -
Organism   Staphylococcus simulans strain PFJB-50N     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1097125..1107841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCT9_RS05520 - 1098478..1099278 (+) 801 WP_412521429.1 carbon-nitrogen family hydrolase -
  ACFCT9_RS05525 - 1099583..1099663 (-) 81 WP_105994213.1 delta-lysin family phenol-soluble modulin -
  ACFCT9_RS05530 - 1100061..1100636 (+) 576 WP_412521430.1 accessory gene regulator AgrB -
  ACFCT9_RS05535 agrD 1100639..1100776 (+) 138 WP_107540291.1 cyclic lactone autoinducer peptide AgrD -
  ACFCT9_RS05540 agrC 1100822..1102123 (+) 1302 WP_412521431.1 quorum-sensing sensor histidine kinase AgrC -
  ACFCT9_RS05545 agrA 1102125..1102841 (+) 717 WP_412521432.1 quorum-sensing response regulator AgrA Regulator
  ACFCT9_RS05550 - 1102917..1104401 (-) 1485 WP_412521433.1 GH32 C-terminal domain-containing protein -
  ACFCT9_RS05555 - 1104637..1105725 (+) 1089 WP_412521434.1 YeeE/YedE family protein -
  ACFCT9_RS05560 - 1105779..1106003 (+) 225 WP_107606162.1 sulfurtransferase TusA family protein -
  ACFCT9_RS05565 - 1106049..1106690 (-) 642 WP_412521435.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27734.54 Da        Isoelectric Point: 4.7076

>NTDB_id=1088621 ACFCT9_RS05545 WP_412521432.1 1102125..1102841(+) (agrA) [Staphylococcus simulans strain PFJB-50N]
MKIIICEDDVQQREHIESIIENYIMIEEKPLEVALSTGDPYEVLEFAKATNEICCYFLDIQLDSDINGIKLGSELRNYDS
VGSIIFITSHSELTYLTFVYKVAAMDFIFKDDPSEMKSRIIDCIETALTRLQLLSKESSLETIELKRGSNSIYVNYDDVM
FFESSAKSHRLIAHLDNRQIEFYGNLKDLSQLDDRFFRCHNSFVINRNNIEEVISKEREVHFKNGEHCYISVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1088621 ACFCT9_RS05545 WP_412521432.1 1102125..1102841(+) (agrA) [Staphylococcus simulans strain PFJB-50N]
GTGAAGATTATTATTTGTGAAGATGATGTACAACAACGTGAACACATTGAATCCATCATTGAAAATTATATTATGATTGA
AGAAAAGCCTCTAGAAGTTGCGTTATCTACAGGTGATCCTTATGAGGTACTGGAATTTGCGAAAGCTACGAATGAAATTT
GTTGCTACTTCTTAGATATCCAATTAGATTCTGATATTAACGGTATTAAACTTGGCAGTGAGTTAAGAAATTATGATTCA
GTCGGCAGCATTATCTTTATTACGAGTCACAGTGAGCTGACTTATCTTACTTTTGTTTATAAAGTAGCAGCGATGGATTT
TATTTTTAAAGACGATCCTTCAGAAATGAAATCTCGTATTATCGATTGTATAGAAACGGCACTGACAAGATTACAGCTGC
TTTCAAAAGAATCAAGTCTTGAGACCATTGAGTTGAAACGTGGCAGCAATTCAATCTATGTGAATTATGATGATGTTATG
TTCTTTGAATCCTCAGCAAAATCACATCGCTTAATTGCACATCTCGATAATCGACAAATTGAGTTTTACGGCAACTTAAA
AGATTTAAGTCAATTAGATGACCGCTTCTTCCGTTGCCACAACAGTTTCGTTATTAATCGAAACAATATCGAAGAAGTGA
TTTCTAAAGAACGAGAAGTTCACTTTAAAAATGGTGAACACTGTTATATCTCAGTAAGGAATTTGAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

78.992

100

0.79

Multiple sequence alignment