Detailed information NTG1088495

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACLD94_RS17410
• Genome accession: NZ_CP178220
• Coordinates: 3523709..3524854 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JN-Y2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3518709..3529854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLD94_RS17390 (ACLD94_17390)	-	3519606..3520034 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
ACLD94_RS17395 (ACLD94_17395)	-	3520188..3520700 (+)	513	Protein_3368	bacteriocin biosynthesis protein AlbG	-
ACLD94_RS17400 (ACLD94_17400)	-	3520707..3522083 (-)	1377	WP_032875890.1	YncE family protein	-
ACLD94_RS17405 (ACLD94_17405)	-	3522123..3523478 (-)	1356	WP_032875887.1	YncE family protein	-
ACLD94_RS17410 (ACLD94_17410)	rapF	3523709..3524854 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
ACLD94_RS17415 (ACLD94_17415)	-	3524838..3524957 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ACLD94_RS17420 (ACLD94_17420)	speB	3525080..3525952 (-)	873	WP_032875884.1	agmatinase	-
ACLD94_RS17425 (ACLD94_17425)	speE	3526011..3526841 (-)	831	WP_003151052.1	spermidine synthase	-
ACLD94_RS17430 (ACLD94_17430)	-	3527041..3529113 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
ACLD94_RS17435 (ACLD94_17435)	-	3529138..3529571 (-)	434	Protein_3376	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=1088495 ACLD94_RS17410 WP_074534220.1 3523709..3524854(+) (rapF) [Bacillus velezensis strain JN-Y2]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1088495 ACLD94_RS17410 WP_074534220.1 3523709..3524854(+) (rapF) [Bacillus velezensis strain JN-Y2]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541