Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACLII2_RS21940 Genome accession   NZ_CP178213
Coordinates   4172296..4172586 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4167296..4177586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS21925 yabE 4167492..4168805 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  ACLII2_RS21930 dayD 4168961..4169728 (-) 768 WP_003226756.1 TatD family hydrolase -
  ACLII2_RS21935 metG 4169807..4171801 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  ACLII2_RS21940 abrB 4172296..4172586 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  ACLII2_RS21945 rsmI 4172635..4173513 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACLII2_RS21950 yazA 4173488..4173787 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  ACLII2_RS21955 trmNF 4173774..4174517 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACLII2_RS21960 yabA 4174576..4174935 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  ACLII2_RS21965 ricT 4174950..4175777 (-) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  ACLII2_RS21970 holB 4175780..4176769 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  ACLII2_RS21975 yaaR 4176781..4177221 (-) 441 WP_009966249.1 YaaR family protein -
  ACLII2_RS21980 darA 4177234..4177563 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=1088345 ACLII2_RS21940 WP_003226760.1 4172296..4172586(+) (abrB) [Bacillus subtilis subsp. subtilis strain BM107]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1088345 ACLII2_RS21940 WP_003226760.1 4172296..4172586(+) (abrB) [Bacillus subtilis subsp. subtilis strain BM107]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment