Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACLII2_RS16395 Genome accession   NZ_CP178213
Coordinates   3099739..3100317 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3094739..3105317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS16360 lepB 3094745..3095251 (-) 507 WP_003233128.1 signal peptidase I -
  ACLII2_RS16365 yhjE 3095253..3095876 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ACLII2_RS16370 - 3096028..3096390 (+) 363 WP_003233132.1 hypothetical protein -
  ACLII2_RS16375 yhjC 3096598..3096798 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACLII2_RS16380 yhjB 3096795..3098264 (+) 1470 WP_003233134.1 sodium:solute symporter family protein -
  ACLII2_RS16385 yhjA 3098307..3098576 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  ACLII2_RS16390 yhxD 3098793..3099692 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  ACLII2_RS16395 comK 3099739..3100317 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACLII2_RS16400 yhzC 3100610..3100843 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACLII2_RS16405 yhxC 3100871..3101728 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  ACLII2_RS16410 comW 3101840..3103369 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  ACLII2_RS16415 - 3103424..3104050 (+) 627 Protein_3244 protoglobin domain-containing protein -
  ACLII2_RS16420 - 3104291..3104806 (+) 516 WP_326255844.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1088325 ACLII2_RS16395 WP_003245329.1 3099739..3100317(-) (comK) [Bacillus subtilis subsp. subtilis strain BM107]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1088325 ACLII2_RS16395 WP_003245329.1 3099739..3100317(-) (comK) [Bacillus subtilis subsp. subtilis strain BM107]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment