Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACLII2_RS10005 Genome accession   NZ_CP178213
Coordinates   1875997..1876617 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1870997..1881617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS09985 dnaD 1871288..1871986 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  ACLII2_RS09990 nth 1872005..1872664 (+) 660 WP_009967580.1 endonuclease III -
  ACLII2_RS09995 ypoC 1872661..1873155 (+) 495 WP_009967579.1 YpoC family protein -
  ACLII2_RS10000 ponA 1873231..1875975 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  ACLII2_RS10005 recU 1875997..1876617 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACLII2_RS10010 yppC 1876658..1877620 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ACLII2_RS10015 sspM 1877645..1877749 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACLII2_RS10020 yppD 1877948..1878193 (+) 246 WP_004398488.1 YppD family protein -
  ACLII2_RS10025 yppE 1878239..1878610 (+) 372 WP_003246080.1 YppE family protein -
  ACLII2_RS10030 yppF 1878649..1878837 (-) 189 WP_003230690.1 YppF family protein -
  ACLII2_RS10035 sppG 1879025..1879402 (+) 378 WP_004398696.1 YppG family protein -
  ACLII2_RS10040 ypqA 1879423..1879842 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ACLII2_RS10045 ptsA 1879980..1880486 (+) 507 WP_009967573.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1088306 ACLII2_RS10005 WP_004399067.1 1875997..1876617(-) (recU) [Bacillus subtilis subsp. subtilis strain BM107]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1088306 ACLII2_RS10005 WP_004399067.1 1875997..1876617(-) (recU) [Bacillus subtilis subsp. subtilis strain BM107]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment