Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACLII2_RS08490 Genome accession   NZ_CP178213
Coordinates   1607712..1608479 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1602712..1613479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS08460 pgpH 1603008..1605143 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  ACLII2_RS08465 ybeY 1605144..1605617 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ACLII2_RS08470 unpK 1605598..1605969 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  ACLII2_RS08475 - 1606088..1606498 (+) 411 WP_003230049.1 cytidine deaminase -
  ACLII2_RS08480 era 1606479..1607384 (+) 906 WP_003230051.1 GTPase Era -
  ACLII2_RS08485 yqzL 1607532..1607675 (+) 144 WP_003230053.1 YqzL family protein -
  ACLII2_RS08490 recO 1607712..1608479 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  ACLII2_RS08495 glyQ 1608776..1609663 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ACLII2_RS08500 glyS 1609656..1611695 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  ACLII2_RS08505 ccpN 1611828..1612466 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  ACLII2_RS08510 ppsR 1612492..1613304 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=1088294 ACLII2_RS08490 WP_003230055.1 1607712..1608479(+) (recO) [Bacillus subtilis subsp. subtilis strain BM107]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1088294 ACLII2_RS08490 WP_003230055.1 1607712..1608479(+) (recO) [Bacillus subtilis subsp. subtilis strain BM107]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment