Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACLII2_RS06950 Genome accession   NZ_CP178213
Coordinates   1352252..1352998 (+) Length   248 a.a.
NCBI ID   WP_010886586.1    Uniprot ID   A0AAE2SM29
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347252..1357998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS06935 - 1347479..1347670 (-) 192 WP_003222590.1 hypothetical protein -
  ACLII2_RS06940 valS 1348118..1350760 (+) 2643 WP_004398606.1 valine--tRNA ligase -
  ACLII2_RS06945 folC 1350820..1352112 (+) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACLII2_RS06950 comC 1352252..1352998 (+) 747 WP_010886586.1 prepilin peptidase Machinery gene
  ACLII2_RS06955 spoIIB 1353132..1354130 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  ACLII2_RS06960 maf 1354283..1354852 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ACLII2_RS06965 radC 1354889..1355584 (+) 696 WP_003246034.1 RadC family protein -
  ACLII2_RS06970 mreB 1355676..1356689 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACLII2_RS06975 mreC 1356720..1357592 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26435.04 Da        Isoelectric Point: 9.7944

>NTDB_id=1088286 ACLII2_RS06950 WP_010886586.1 1352252..1352998(+) (comC) [Bacillus subtilis subsp. subtilis strain BM107]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1088286 ACLII2_RS06950 WP_010886586.1 1352252..1352998(+) (comC) [Bacillus subtilis subsp. subtilis strain BM107]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment