Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLII3_RS05330 Genome accession   NZ_CP178208
Coordinates   1153096..1154454 (-) Length   452 a.a.
NCBI ID   WP_412987082.1    Uniprot ID   -
Organism   Pontimicrobium sp. IMCC45349     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1148096..1159454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII3_RS05315 - 1148445..1149119 (-) 675 WP_412987078.1 lipoprotein signal peptidase -
  ACLII3_RS05320 - 1149233..1149616 (-) 384 WP_412987079.1 TraR/DksA family transcriptional regulator -
  ACLII3_RS05325 ileS 1149621..1153025 (-) 3405 WP_412987080.1 isoleucine--tRNA ligase -
  ACLII3_RS05330 radA 1153096..1154454 (-) 1359 WP_412987082.1 DNA repair protein RadA Machinery gene
  ACLII3_RS05335 - 1154455..1155603 (-) 1149 WP_412987084.1 alpha/beta hydrolase -
  ACLII3_RS05340 - 1155669..1156649 (-) 981 WP_412987086.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ACLII3_RS05345 panD 1156653..1157003 (-) 351 WP_412987088.1 aspartate 1-decarboxylase -
  ACLII3_RS05350 panC 1157017..1157868 (-) 852 WP_412987090.1 pantoate--beta-alanine ligase -
  ACLII3_RS05355 - 1157976..1158785 (+) 810 WP_412987092.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49852.40 Da        Isoelectric Point: 7.6187

>NTDB_id=1088227 ACLII3_RS05330 WP_412987082.1 1153096..1154454(-) (radA) [Pontimicrobium sp. IMCC45349]
MAKVKTTFFCQSCGNQYAKWQGQCTACKSWNTIVEEVIQKADKSDWKTPTSASKRVSKPLKIKEIDSAKEARLNTFDQEF
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERVNPNNDTCYILTETKTQNIFKQI
ESLEPEVVIIDSIQTLHSDYIEASAGSISQIKECTTELIKFAKETSTPVLLIGHITKDGHIAGPKILEHMVDTVLQFEGD
RNHVFRILRAHKNRFGSTNELGIYEMQGSGLREVTNPSEILISKKDEELSGNAIAVTLEGMRPLLIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDEAIQKDYCFAAEVGLSGEI
RPVQRVEQRILEAEKLGFATIFVSKYNKISLKNTAIKIQLVSKIEDLVGYLV

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1088227 ACLII3_RS05330 WP_412987082.1 1153096..1154454(-) (radA) [Pontimicrobium sp. IMCC45349]
ATGGCTAAAGTAAAAACTACTTTTTTTTGTCAGAGTTGTGGCAATCAATATGCGAAGTGGCAAGGACAATGTACAGCATG
TAAATCTTGGAATACTATTGTAGAAGAAGTTATTCAAAAAGCTGATAAAAGCGATTGGAAAACACCTACATCTGCTTCTA
AACGTGTTTCAAAACCATTAAAAATTAAGGAGATTGACTCAGCTAAGGAGGCAAGACTTAATACATTTGATCAAGAATTT
AATCGTGTGTTAGGAGGTGGTATTGTACCAGGATCTTTAACCTTGCTTGGTGGAGAACCAGGAATAGGGAAAAGCACATT
GCTACTTCAAATTTCTTTAAAATTGCCATATAAAACCTTGTATGTTTCGGGTGAAGAAAGCCAAAAGCAAATAAAAATGC
GTGCAGAACGTGTCAATCCTAATAATGATACGTGTTATATTCTTACTGAAACTAAAACCCAAAACATTTTTAAGCAAATA
GAATCTCTTGAGCCAGAAGTGGTAATTATAGATTCCATTCAAACGTTACATAGCGATTATATTGAGGCTTCGGCAGGTAG
CATTTCTCAAATTAAAGAATGTACTACAGAGCTTATTAAGTTTGCAAAAGAAACATCAACACCTGTGTTGTTAATTGGTC
ATATAACTAAGGATGGTCATATTGCTGGTCCAAAAATTTTGGAGCACATGGTAGATACTGTTTTGCAATTTGAAGGTGAC
CGAAATCATGTGTTTAGAATATTAAGAGCACATAAAAACCGTTTTGGTTCTACAAATGAACTGGGAATTTATGAAATGCA
AGGTTCTGGGTTACGAGAAGTAACGAATCCTAGTGAAATTTTAATTTCAAAAAAGGACGAAGAATTATCTGGTAATGCTA
TTGCGGTTACCTTAGAAGGTATGCGTCCCTTGCTAATTGAAGTACAAGCTTTAGTTAGTACAGCAGTATATGGAACACCA
CAACGTAGTGCAACAGGTTTTAATGCGAAACGTTTAAATATGCTACTAGCTGTTTTAGAAAAACGTGCAGGTTTTAGATT
AGGAGCAAAAGATGTGTTTTTAAATATTACAGGAGGCATAAATGTGGATGATCCAGCTATAGATCTAGCAGTTGTTGCAG
CAATTTTATCTTCTAATGAAGATGAGGCAATTCAAAAAGATTATTGTTTTGCTGCCGAGGTTGGTTTATCTGGAGAAATT
CGTCCAGTACAGCGTGTAGAACAGCGCATTTTAGAAGCAGAAAAATTAGGGTTTGCAACGATTTTTGTATCTAAATACAA
CAAGATTTCTTTAAAAAATACAGCTATAAAAATTCAATTAGTTTCTAAAATTGAAGACTTGGTTGGTTATTTGGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-219)

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.887

98.009

0.489
  radA Bacillus subtilis subsp. subtilis str. 168

50.698

95.133

0.482
  radA Streptococcus pneumoniae D39

51.054

94.469

0.482
  radA Streptococcus pneumoniae R6

51.054

94.469

0.482
  radA Streptococcus pneumoniae TIGR4

51.054

94.469

0.482
  radA Streptococcus pneumoniae Rx1

51.054

94.469

0.482
  radA Streptococcus mitis NCTC 12261

51.054

94.469

0.482

Multiple sequence alignment