Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACK1I8_RS19725 Genome accession   NZ_CP178207
Coordinates   4768176..4769552 (-) Length   458 a.a.
NCBI ID   WP_412466986.1    Uniprot ID   -
Organism   Pedobacter sp. KLB.chiD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4763176..4774552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1I8_RS19705 (ACK1I8_19705) - 4763612..4764901 (-) 1290 WP_412466982.1 voltage-gated chloride channel family protein -
  ACK1I8_RS19710 (ACK1I8_19710) - 4765048..4766013 (+) 966 WP_412466983.1 tryptophan 2,3-dioxygenase family protein -
  ACK1I8_RS19715 (ACK1I8_19715) - 4766158..4767222 (+) 1065 WP_412466984.1 branched-chain amino acid aminotransferase -
  ACK1I8_RS19720 (ACK1I8_19720) - 4767381..4767845 (-) 465 WP_412466985.1 DUF4920 domain-containing protein -
  ACK1I8_RS19725 (ACK1I8_19725) radA 4768176..4769552 (-) 1377 WP_412466986.1 DNA repair protein RadA Machinery gene
  ACK1I8_RS19730 (ACK1I8_19730) - 4769742..4771292 (-) 1551 WP_412466987.1 Rne/Rng family ribonuclease -
  ACK1I8_RS19735 (ACK1I8_19735) - 4771575..4772453 (-) 879 WP_412466988.1 tetratricopeptide repeat protein -
  ACK1I8_RS19740 (ACK1I8_19740) - 4772464..4772766 (-) 303 WP_055909222.1 HU family DNA-binding protein -
  ACK1I8_RS19745 (ACK1I8_19745) mutY 4772937..4773998 (+) 1062 WP_412466989.1 A/G-specific adenine glycosylase -
  ACK1I8_RS19750 (ACK1I8_19750) - 4774053..4774490 (+) 438 WP_412466990.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50245.68 Da        Isoelectric Point: 6.1961

>NTDB_id=1088224 ACK1I8_RS19725 WP_412466986.1 4768176..4769552(-) (radA) [Pedobacter sp. KLB.chiD]
MAKSKTAYFCQSCGYESAKWLGKCPSCNQWNTFVEEIVEKSPASVPAWKSDTTSRKLSKPSKVNEIQSSTERRILTSDKE
LDRVLGGGLVEGSLVLIGGEPGIGKSTLMLQLALNLKGKKLLYISGEESEQQIKMRAERIQESPSSNCYILTETSTQNIF
KQIEILEPEILVVDSIQTLHSAHIDSTPGSVSQVRECTAELLRFAKETGVPVFLIGHITKDGAIAGPKILEHMVDTVLQF
EGDRHHVYRILRSIKNRFGAAAELGIYEMQGSGLREVSNPSEILLSQRDEELSGIAIAATLEGARPMLIETQALVSSAAY
GTPQRSATGFDTKRMNMLLAVLEKRCGFRLSTQDVFLNIAGGIRVEDPAIDLAVLIAIISSHQDIAVSSKNCFAAEVGLS
GEIRAVNRIEQRIAEADKLGFETIYISKYNLKGISIEKYNLEIKAVSKIEEVFSLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1088224 ACK1I8_RS19725 WP_412466986.1 4768176..4769552(-) (radA) [Pedobacter sp. KLB.chiD]
TTGGCAAAATCAAAAACCGCATATTTCTGTCAAAGCTGTGGCTACGAATCGGCAAAATGGCTAGGCAAATGTCCTTCCTG
CAATCAATGGAATACTTTTGTAGAAGAAATTGTAGAAAAAAGTCCGGCCTCAGTTCCTGCCTGGAAAAGTGATACTACCA
GTCGCAAACTCAGTAAGCCAAGTAAGGTTAATGAAATACAATCATCAACTGAGCGTAGAATATTAACCAGTGATAAAGAA
CTGGACCGTGTATTGGGTGGTGGCCTGGTAGAAGGATCATTGGTATTAATCGGTGGCGAACCGGGCATTGGCAAATCAAC
CCTGATGCTGCAACTGGCGTTAAATTTAAAAGGCAAAAAACTATTATATATCTCTGGCGAGGAAAGCGAACAACAGATAA
AAATGCGGGCGGAAAGGATTCAGGAAAGTCCGTCGTCTAACTGTTACATCTTGACGGAAACATCAACGCAAAACATCTTT
AAACAGATCGAAATTTTAGAACCGGAGATTTTGGTGGTCGATTCTATCCAAACGCTTCATTCTGCCCATATCGATTCTAC
TCCCGGCAGTGTATCGCAGGTAAGGGAGTGTACAGCAGAGCTATTGCGTTTTGCCAAAGAAACCGGCGTACCTGTTTTCC
TTATTGGCCACATCACTAAAGATGGTGCTATTGCGGGACCCAAAATACTCGAACACATGGTTGATACAGTTTTGCAATTC
GAAGGCGACAGGCACCATGTTTATCGAATTCTGAGGTCGATCAAAAACCGATTTGGTGCAGCTGCAGAACTGGGTATTTA
CGAAATGCAGGGAAGTGGTTTGAGGGAGGTTTCCAATCCATCAGAGATTTTACTCTCACAGCGTGATGAAGAGCTGAGCG
GAATAGCTATTGCCGCGACATTAGAAGGCGCCAGGCCAATGTTGATTGAAACACAGGCCCTCGTAAGTTCAGCTGCCTAC
GGAACCCCTCAACGCTCCGCAACAGGCTTCGATACCAAAAGAATGAATATGCTCTTAGCTGTTTTGGAAAAACGCTGTGG
TTTTAGGTTAAGTACACAGGATGTTTTCTTAAATATTGCTGGCGGAATCAGAGTAGAAGATCCTGCCATTGACCTGGCGG
TATTGATTGCCATTATTTCTTCGCATCAGGATATTGCGGTGTCTTCCAAAAATTGTTTTGCGGCAGAAGTTGGCCTGTCA
GGAGAAATTAGGGCGGTAAACAGGATTGAACAACGTATTGCCGAAGCAGACAAGCTAGGTTTCGAAACCATTTATATCTC
TAAATACAATTTGAAAGGAATTTCAATAGAAAAATACAACTTGGAAATTAAGGCTGTATCTAAAATAGAAGAGGTATTCA
GCCTGGTTTTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.278

100

0.526
  radA Streptococcus pneumoniae Rx1

50.218

100

0.502
  radA Streptococcus pneumoniae D39

50.218

100

0.502
  radA Streptococcus pneumoniae R6

50.218

100

0.502
  radA Streptococcus pneumoniae TIGR4

50.218

100

0.502
  radA Streptococcus mitis NCTC 12261

50.218

100

0.502
  radA Streptococcus mitis SK321

50

100

0.5

Multiple sequence alignment