Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACLSTA_RS08260 Genome accession   NZ_CP178203
Coordinates   1715156..1715785 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain APEC17     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710156..1720785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSTA_RS08240 (ACLSTA_08240) ycbZ 1710557..1712317 (-) 1761 WP_000156476.1 AAA family ATPase -
  ACLSTA_RS08245 (ACLSTA_08245) matP 1712503..1712955 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACLSTA_RS08250 (ACLSTA_08250) ompA 1713031..1714071 (-) 1041 WP_001314606.1 porin OmpA -
  ACLSTA_RS08255 (ACLSTA_08255) sulA 1714428..1714937 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  ACLSTA_RS08260 (ACLSTA_08260) sxy/tfoX 1715156..1715785 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACLSTA_RS08265 (ACLSTA_08265) yccS 1715748..1717910 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ACLSTA_RS08270 (ACLSTA_08270) yccF 1717920..1718366 (-) 447 WP_001261236.1 YccF domain-containing protein -
  ACLSTA_RS08275 (ACLSTA_08275) helD 1718489..1720543 (+) 2055 WP_001317751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1088176 ACLSTA_RS08260 WP_000839153.1 1715156..1715785(+) (sxy/tfoX) [Escherichia coli strain APEC17]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1088176 ACLSTA_RS08260 WP_000839153.1 1715156..1715785(+) (sxy/tfoX) [Escherichia coli strain APEC17]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment