Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACK2SD_RS04220 Genome accession   NZ_CP178183
Coordinates   919439..920806 (+) Length   455 a.a.
NCBI ID   WP_029614776.1    Uniprot ID   A0AAI8KDW5
Organism   Pseudomonas sp. SC11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 914439..925806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2SD_RS04195 (ACK2SD_04195) - 915131..915271 (+) 141 WP_037028932.1 DUF2474 domain-containing protein -
  ACK2SD_RS04200 (ACK2SD_04200) - 915819..916943 (-) 1125 WP_412461432.1 methyltransferase -
  ACK2SD_RS04205 (ACK2SD_04205) - 917033..917746 (-) 714 WP_295481384.1 autoinducer binding domain-containing protein -
  ACK2SD_RS04210 (ACK2SD_04210) - 917944..918720 (+) 777 WP_412461433.1 ferredoxin--NADP reductase -
  ACK2SD_RS04215 (ACK2SD_04215) mscL 918844..919263 (-) 420 WP_029614775.1 large-conductance mechanosensitive channel protein MscL -
  ACK2SD_RS04220 (ACK2SD_04220) radA 919439..920806 (+) 1368 WP_029614776.1 DNA repair protein RadA Machinery gene
  ACK2SD_RS04225 (ACK2SD_04225) - 920879..921382 (+) 504 WP_029614777.1 RNA polymerase sigma factor -
  ACK2SD_RS04230 (ACK2SD_04230) - 921451..922428 (+) 978 WP_412461434.1 FecR family protein -
  ACK2SD_RS04235 (ACK2SD_04235) - 922743..925406 (+) 2664 WP_412462267.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48763.19 Da        Isoelectric Point: 6.9556

>NTDB_id=1088122 ACK2SD_RS04220 WP_029614776.1 919439..920806(+) (radA) [Pseudomonas sp. SC11]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGAAAAPAGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATHMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1088122 ACK2SD_RS04220 WP_029614776.1 919439..920806(+) (radA) [Pseudomonas sp. SC11]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGCGCCTGGAATACCCTGGTCGAAACCATGATCGAGAGCGGCGCTGCGGCGGCCCCGGCCGGGCGCGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATCCCGCGCTTCACCACCAGCAGCACGGAACTG
GACCGCGTGCTCGGCGGCGGCTTGGTCGACGGCTCGGTGGTGCTGATCGGTGGCGATCCGGGCATCGGCAAGTCCACCAT
CCTGCTGCAAACCCTGTGCAACATCGCCACCCACATGCCAGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGGTGG
CCATGCGCTCGCGGCGCCTGGGGCTGCCCCAGGACCAGCTCAAGGTGATGACCGAGACCTGCATCGAAACCATCATCGCC
ACCGCTCGCCAGGAAAAGCCGCGGGTGATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAGTCGGCGCC
CGGCGGCGTGGCCCAGGTGCGCGAGAGCACGGCGCTGCTGGTGCGCTACGCCAAACAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTTACCAAGGAAGGCTCGCTGGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAATCGGACGGCCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGTGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAAGTCTCCAACCCCTCGGCGATCTTCCTCAACCGGACCCAGGAGGAAGTGCCCGGCA
GCGTGGTGATGGCGACTTGGGAGGGCACCCGACCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACGACAGCCACTTGGCC
AACCCGCGCCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCGGTGCTGCACCGCCACGGCGGCAT
TCCCACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCCTCGGACCTGGCGCTTC
TGGCAGCGGTGATGTCCAGCCTGCGCAACCGCCCGCTGGCCCACGGCCTGCTGGTTTTCGGTGAAATCGGTCTGTCCGGC
GAAGTGCGCCCGGTGCCCAGTGGCCAGGAGCGTCTCAAGGAAGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCCAAGGAAGCGCCGGCTGGACTGCAGGTGATCGCAGTGACGCGACTGGAGCAGGCGCTGGACGCGTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.49
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus mitis NCTC 12261

45.969

100

0.464
  radA Streptococcus mitis SK321

46.154

100

0.462

Multiple sequence alignment