Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABWW09_RS10450 Genome accession   NZ_AP031332
Coordinates   1915768..1916076 (+) Length   102 a.a.
NCBI ID   WP_041444468.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF27     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910768..1921076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWW09_RS10420 (TthTF27_20550) - 1911850..1912314 (+) 465 WP_224065382.1 hypothetical protein -
  ABWW09_RS10425 (TthTF27_20560) pfkA 1912291..1913259 (-) 969 WP_124105241.1 6-phosphofructokinase -
  ABWW09_RS10430 (TthTF27_20570) rsmI 1913256..1914050 (-) 795 WP_353300372.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABWW09_RS10435 (TthTF27_20580) - 1914052..1914546 (-) 495 WP_124105239.1 TFIIB-type zinc ribbon-containing protein -
  ABWW09_RS10440 (TthTF27_20590) - 1914609..1915136 (-) 528 WP_011173971.1 inorganic diphosphatase -
  ABWW09_RS10445 (TthTF27_20600) - 1915169..1915795 (+) 627 WP_143591818.1 YcxB family protein -
  ABWW09_RS10450 (TthTF27_20610) comEA 1915768..1916076 (+) 309 WP_041444468.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABWW09_RS10455 (TthTF27_20620) comA/comEC 1916073..1918106 (+) 2034 WP_353300373.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABWW09_RS10460 (TthTF27_20630) - 1918094..1918903 (-) 810 WP_014510984.1 ParB/RepB/Spo0J family partition protein -
  ABWW09_RS10465 (TthTF27_20640) soj 1918887..1919636 (-) 750 WP_353300374.1 chromosome-partitioning ATPase Soj -
  ABWW09_RS10470 (TthTF27_20650) rsmG 1919630..1920379 (-) 750 WP_353300375.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10933.21 Da        Isoelectric Point: 10.3435

>NTDB_id=108798 ABWW09_RS10450 WP_041444468.1 1915768..1916076(+) (comEA) [Thermus thermophilus strain TF27]
MVLGYLVAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=108798 ABWW09_RS10450 WP_041444468.1 1915768..1916076(+) (comEA) [Thermus thermophilus strain TF27]
CTGGTCCTCGGCTACCTCGTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTCCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

99.02

100

0.99

Multiple sequence alignment