Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HQ24_RS17710 Genome accession   NZ_CP008801
Coordinates   3542559..3543236 (+) Length   225 a.a.
NCBI ID   WP_000178154.1    Uniprot ID   P25960
Organism   Escherichia coli KLY     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3537559..3548236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ24_RS17675 (HQ24_17115) gspG 3538039..3538476 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  HQ24_RS17680 (HQ24_17120) gspH 3538484..3538993 (+) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  HQ24_RS17685 (HQ24_17125) gspI 3538990..3539367 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  HQ24_RS17690 (HQ24_17130) gspJ 3539360..3539947 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  HQ24_RS17695 (HQ24_17135) gspK 3539940..3540923 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  HQ24_RS17700 (HQ24_17140) gspL 3540938..3542101 (+) 1164 WP_001115238.1 type II secretion system protein GspL -
  HQ24_RS17705 (HQ24_17145) gspM 3542098..3542559 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  HQ24_RS17710 (HQ24_17150) pilD 3542559..3543236 (+) 678 WP_000178154.1 prepilin peptidase GspO Machinery gene
  HQ24_RS17715 (HQ24_17155) bfr 3543265..3543741 (-) 477 WP_000675504.1 bacterioferritin -
  HQ24_RS17720 (HQ24_17160) bfd 3543813..3544007 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  HQ24_RS17725 (HQ24_17165) chiA 3544176..3546869 (-) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24956.82 Da        Isoelectric Point: 7.6353

>NTDB_id=108751 HQ24_RS17710 WP_000178154.1 3542559..3543236(+) (pilD) [Escherichia coli KLY]
MTMLLPLFILVGFIADYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=108751 HQ24_RS17710 WP_000178154.1 3542559..3543236(+) (pilD) [Escherichia coli KLY]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGATTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P25960

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378

Multiple sequence alignment