Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   ABXH20_RS10460 Genome accession   NZ_AP031328
Coordinates   1916069..1918102 (+) Length   677 a.a.
NCBI ID   WP_353300373.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF24     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1911069..1923102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH20_RS10425 (TthTF24_20540) - 1911846..1912310 (+) 465 WP_224065382.1 hypothetical protein -
  ABXH20_RS10430 (TthTF24_20550) pfkA 1912287..1913255 (-) 969 WP_124105241.1 6-phosphofructokinase -
  ABXH20_RS10435 (TthTF24_20560) rsmI 1913252..1914046 (-) 795 WP_353300372.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABXH20_RS10440 (TthTF24_20570) - 1914048..1914542 (-) 495 WP_124105239.1 TFIIB-type zinc ribbon-containing protein -
  ABXH20_RS10445 (TthTF24_20580) - 1914605..1915132 (-) 528 WP_011173971.1 inorganic diphosphatase -
  ABXH20_RS10450 (TthTF24_20590) - 1915165..1915791 (+) 627 WP_143591818.1 YcxB family protein -
  ABXH20_RS10455 (TthTF24_20600) comEA 1915764..1916072 (+) 309 WP_041444468.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABXH20_RS10460 (TthTF24_20610) comA/comEC 1916069..1918102 (+) 2034 WP_353300373.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABXH20_RS10465 (TthTF24_20620) - 1918090..1918899 (-) 810 WP_014510984.1 ParB/RepB/Spo0J family partition protein -
  ABXH20_RS10470 (TthTF24_20630) soj 1918883..1919632 (-) 750 WP_353300374.1 chromosome-partitioning ATPase Soj -
  ABXH20_RS10475 (TthTF24_20640) rsmG 1919626..1920375 (-) 750 WP_353300375.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 71812.94 Da        Isoelectric Point: 10.0458

>NTDB_id=108745 ABXH20_RS10460 WP_353300373.1 1916069..1918102(+) (comA/comEC) [Thermus thermophilus strain TF24]
MRPSWTWGVGLGMGALVAAWGLFAPWAFLGLGLLPFLRLPFALGFGLVLARALLFPLPEPPWGAAVEGVFAVRGGFTRAE
GHLLWVSHYPPLPDGRYRLRGRIAPPQGRTNPGGFDQRAWLLSRGAKGVLRAESAEPLGPLPDWREGFRERLGAGLSLEA
REVVEGLVLGDKGGLEAAYPLFQRAGLAHLLALSGLHVGVLVGFAVLGLYPLGRWRYLLALALLPFYLLLAGPSPSLVRA
SLMAGLSLLGLFLGLGGAGVVQALGLALFLQLLLRPEALLGLGFQLSYLAVLGLALVLPALRLPPGPRGYLLGGVAASLA
VQAFLLPLLLHRFGFAPLLAPLANLLALPLVALLVPLGFLKLFLGALPAPLVEPLAQGLLLLAGLAAQGPLLRWGEIAPV
GFALYYLGLLPLLFALHRRLPWRRALLLASLPALVGLLAAWPKPLDLWMLDVGQGDALLARMGGGEVLVDGGRAEKGEAV
VRALRALGVEALELLVATHPDADHYGGLLRVVEEVPVGLALLAPGFPEDHPLAEALRARGVPAVRAAAGTRLKVGRGEVR
VLWPEALSGDDNQDGLALLLDFGRGRALLLADLPREVEARLPVGEVEALKVSHHGSQSGTSEALLERTRPQVALIGVGPN
PFGHPHPEVLERLKRHGAEVRRTDQDGAVRVLFGYAW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=108745 ABXH20_RS10460 WP_353300373.1 1916069..1918102(+) (comA/comEC) [Thermus thermophilus strain TF24]
ATGAGGCCTTCTTGGACCTGGGGAGTGGGGCTTGGGATGGGGGCTTTGGTGGCCGCCTGGGGGCTTTTCGCGCCTTGGGC
CTTCCTTGGGCTCGGCCTCCTTCCCTTCCTCCGCCTTCCCTTCGCCCTGGGCTTCGGCCTCGTCCTGGCCCGGGCCCTCC
TCTTCCCCTTGCCCGAGCCCCCGTGGGGCGCCGCCGTGGAGGGGGTCTTCGCCGTGAGGGGCGGGTTCACACGGGCGGAG
GGCCACCTCCTCTGGGTGAGCCACTATCCCCCTCTACCGGACGGCCGCTACCGCCTCCGGGGGCGCATCGCCCCGCCCCA
AGGCCGGACCAACCCCGGGGGGTTTGACCAACGGGCCTGGCTCCTGAGCCGGGGGGCCAAGGGGGTGCTCCGGGCCGAAA
GCGCCGAGCCCTTGGGGCCCCTGCCCGACTGGAGGGAGGGGTTCCGGGAACGCCTAGGGGCGGGCCTGAGCCTCGAGGCC
CGGGAGGTGGTGGAGGGCCTGGTCCTCGGGGACAAGGGGGGCTTAGAGGCGGCCTACCCCCTCTTCCAGCGGGCGGGCCT
CGCCCACCTCCTGGCGCTTTCCGGCCTTCACGTGGGGGTGCTCGTGGGCTTCGCCGTCCTCGGCCTCTACCCCCTGGGGC
GGTGGCGCTACCTCCTGGCCCTCGCCCTCCTCCCCTTCTACCTCCTCCTCGCCGGGCCGAGCCCCTCCCTGGTGCGGGCG
AGCCTCATGGCGGGCCTTTCCCTCCTCGGCCTTTTCCTGGGCCTTGGGGGGGCCGGGGTGGTCCAGGCCCTGGGGCTCGC
CCTCTTCCTCCAGCTCCTCCTCCGCCCCGAGGCCCTCCTCGGCCTCGGGTTCCAGCTCTCCTACCTCGCGGTGCTGGGCC
TGGCCCTGGTCCTCCCGGCCCTGAGGCTTCCCCCGGGCCCCAGGGGCTACCTCCTCGGGGGCGTGGCCGCAAGCCTGGCC
GTCCAGGCCTTCCTCCTCCCCCTCCTCCTCCACCGCTTCGGCTTCGCCCCCCTCCTCGCCCCTCTCGCCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTCGTGCCCCTCGGCTTCCTCAAGCTCTTCCTCGGCGCCCTCCCCGCCCCCCTGGTGGAGC
CCCTCGCCCAGGGGCTCCTCCTCCTGGCAGGGCTTGCGGCCCAGGGGCCCCTCCTCCGCTGGGGGGAGATCGCCCCCGTG
GGCTTTGCCCTCTACTACCTGGGCCTTCTCCCCCTCCTTTTCGCCCTTCACCGCAGGCTTCCCTGGCGGCGCGCCCTCCT
CCTCGCCTCCCTGCCCGCCCTGGTGGGCCTCCTCGCCGCCTGGCCCAAGCCCCTGGACCTCTGGATGCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGGGGCGGGGAGGTCCTGGTGGACGGGGGACGGGCGGAGAAGGGGGAGGCGGTG
GTCCGGGCCCTCCGCGCCCTCGGGGTGGAGGCCCTGGAGCTTTTGGTGGCCACCCACCCCGACGCGGACCACTACGGGGG
GCTTCTCCGGGTAGTGGAGGAGGTCCCCGTGGGTCTCGCCCTCCTCGCCCCCGGCTTCCCCGAGGACCACCCCCTGGCCG
AAGCCCTAAGGGCGCGGGGCGTCCCCGCGGTGCGGGCCGCGGCGGGAACCCGCCTTAAGGTGGGCCGGGGCGAGGTCCGG
GTGCTCTGGCCCGAGGCCCTCTCCGGGGACGACAACCAAGACGGCCTCGCCCTCCTCCTGGACTTCGGCCGGGGACGGGC
CCTCCTCCTCGCCGACCTGCCCCGGGAGGTGGAGGCCAGGCTTCCCGTGGGGGAGGTGGAGGCGCTCAAGGTGAGCCACC
ATGGCTCCCAAAGCGGCACCTCCGAGGCCCTCCTGGAAAGGACGAGGCCCCAGGTGGCCCTCATCGGGGTGGGGCCCAAC
CCCTTCGGCCACCCCCACCCCGAGGTCCTGGAGCGCCTTAAGCGCCACGGCGCGGAGGTGCGCCGCACCGACCAGGACGG
GGCGGTGCGCGTCCTCTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-635)

Domain of unknown function (DUF4131) (DUF4131)

(93-136)

Competence protein (Competence)

(167-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

97.932

100

0.979
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.196

90.399

0.363

Multiple sequence alignment