Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HQ24_RS13850 Genome accession   NZ_CP008801
Coordinates   2790740..2791255 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli KLY     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2785740..2796255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ24_RS13825 (HQ24_13350) ygaZ 2786139..2786876 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  HQ24_RS13830 (HQ24_13355) ygaH 2786866..2787201 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HQ24_RS13835 (HQ24_13360) emrR 2787292..2787822 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HQ24_RS13840 (HQ24_13365) emrA 2787949..2789121 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HQ24_RS13845 (HQ24_13370) emrB 2789138..2790676 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HQ24_RS13850 (HQ24_13375) luxS 2790740..2791255 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HQ24_RS13855 (HQ24_13380) gshA 2791405..2792961 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HQ24_RS13860 (HQ24_13385) yqaA 2793034..2793462 (-) 429 WP_001287454.1 YqaA family protein -
  HQ24_RS13865 (HQ24_13390) yqaB 2793459..2794025 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HQ24_RS13900 (HQ24_13420) csrA 2795483..2795668 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=108736 HQ24_RS13850 WP_001130211.1 2790740..2791255(-) (luxS) [Escherichia coli KLY]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=108736 HQ24_RS13850 WP_001130211.1 2790740..2791255(-) (luxS) [Escherichia coli KLY]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731