Detailed information
Bioinformatically predicted
Overview
| Name | pilW | Type | Machinery gene |
| Locus tag | AB4Y54_RS03400 | Genome accession | NZ_AP031325 |
| Coordinates | 589217..589801 (-) | Length | 194 a.a. |
| NCBI ID | WP_353406126.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain TF21 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 584217..594801
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4Y54_RS03385 (TthTF21_06630) | - | 585158..585712 (-) | 555 | WP_353300922.1 | shikimate kinase | - |
| AB4Y54_RS03390 (TthTF21_06640) | aroC | 585737..586888 (-) | 1152 | WP_353300692.1 | chorismate synthase | - |
| AB4Y54_RS03395 (TthTF21_06650) | pilQ | 586947..589220 (-) | 2274 | WP_353300693.1 | secretin N-terminal domain-containing protein | Machinery gene |
| AB4Y54_RS03400 (TthTF21_06660) | pilW | 589217..589801 (-) | 585 | WP_353406126.1 | hypothetical protein | Machinery gene |
| AB4Y54_RS03405 (TthTF21_06670) | pilO | 590100..590681 (-) | 582 | WP_143586070.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AB4Y54_RS03410 (TthTF21_06680) | pilN | 590671..591294 (-) | 624 | WP_011173433.1 | competence protein | Machinery gene |
| AB4Y54_RS03415 (TthTF21_06690) | pilM | 591287..592420 (-) | 1134 | WP_353300695.1 | type IV pilus assembly protein PilM | Machinery gene |
| AB4Y54_RS03420 (TthTF21_06700) | - | 592557..593561 (-) | 1005 | WP_244340638.1 | homoisocitrate dehydrogenase | - |
| AB4Y54_RS03425 (TthTF21_06710) | - | 593616..594107 (-) | 492 | WP_011173430.1 | DUF5317 domain-containing protein | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 19498.48 Da Isoelectric Point: 4.6552
>NTDB_id=108699 AB4Y54_RS03400 WP_353406126.1 589217..589801(-) (pilW) [Thermus thermophilus strain TF21]
MARAEPPPPNPFVPLVVETPPPPPPPASASRPTPVPEGPAVRVQTPAPAPQAAPATRPIPGTSGALPAPKVLSPALSAPL
PQARETPPRVAVPTALVEAPLPGPEEKGAEAEAPTPASPLERLVAEKGLRLSGTLLGPVSVAILESKEGYLVVPAGSPIP
GTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ
MARAEPPPPNPFVPLVVETPPPPPPPASASRPTPVPEGPAVRVQTPAPAPQAAPATRPIPGTSGALPAPKVLSPALSAPL
PQARETPPRVAVPTALVEAPLPGPEEKGAEAEAPTPASPLERLVAEKGLRLSGTLLGPVSVAILESKEGYLVVPAGSPIP
GTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ
Nucleotide
Download Length: 585 bp
>NTDB_id=108699 AB4Y54_RS03400 WP_353406126.1 589217..589801(-) (pilW) [Thermus thermophilus strain TF21]
GTGGCCCGGGCCGAGCCCCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCCCCACCTCCGGC
CTCCGCCTCCCGCCCCACGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCGGCCCCCCAGGCGGCCC
CCGCCACCCGGCCCATCCCCGGGACCTCCGGCGCCCTCCCGGCGCCCAAGGTCCTCTCCCCCGCGCTGTCCGCCCCCCTG
CCCCAGGCCAGGGAAACGCCGCCTAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAA
AGGGGCGGAGGCGGAGGCCCCCACCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGA
CCCTGCTCGGCCCCGTGAGCGTGGCCATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCC
GGCACGGAGGCCGTGGTGCGCCAGGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCT
CGTCCAAGCTGGAGGTGGCCAATGA
GTGGCCCGGGCCGAGCCCCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCCCCACCTCCGGC
CTCCGCCTCCCGCCCCACGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCGGCCCCCCAGGCGGCCC
CCGCCACCCGGCCCATCCCCGGGACCTCCGGCGCCCTCCCGGCGCCCAAGGTCCTCTCCCCCGCGCTGTCCGCCCCCCTG
CCCCAGGCCAGGGAAACGCCGCCTAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAA
AGGGGCGGAGGCGGAGGCCCCCACCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGA
CCCTGCTCGGCCCCGTGAGCGTGGCCATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCC
GGCACGGAGGCCGTGGTGCGCCAGGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCT
CGTCCAAGCTGGAGGTGGCCAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilW | Thermus thermophilus HB27 |
96.392 |
100 |
0.964 |