Detailed information NTG1086924

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CLC19172_RS06225
• Genome accession: NZ_CP177362
• Coordinates: 1183689..1184603 (-)
• Length: 304 a.a.
• NCBI ID: WP_257396148.1
• Uniprot ID: -
• Organism: Campylobacter lari subsp. concheus strain RM19172
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1178689..1189603

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLC19172_RS06200 (CLC19172_1221)	mgtE	1179027..1180370 (+)	1344	WP_220523763.1	magnesium transporter	-
CLC19172_RS06205 (CLC19172_1222)	tpx	1180383..1180901 (+)	519	WP_149062569.1	thiol peroxidase	-
CLC19172_RS06210 (CLC19172_1223)	-	1180898..1182283 (-)	1386	WP_220523765.1	replicative DNA helicase	-
CLC19172_RS06215 (CLC19172_1224)	cysK	1182296..1183198 (-)	903	WP_039668729.1	cysteine synthase A	-
CLC19172_RS06220 (CLC19172_1225)	-	1183295..1183597 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
CLC19172_RS06225 (CLC19172_1226)	waaF	1183689..1184603 (-)	915	WP_257396148.1	lipopolysaccharide heptosyltransferase II	Regulator
CLC19172_RS06230 (CLC19172_1227)	-	1184661..1185479 (+)	819	WP_257396147.1	glycosyltransferase family 2 protein	-
CLC19172_RS06235	-	1185471..1186007 (-)	537	WP_257396146.1	alpha-2,3-sialyltransferase	-
CLC19172_RS06240	-	1186183..1186308 (-)	126	WP_257396145.1	alpha-2,3-sialyltransferase	-
CLC19172_RS06245 (CLC19172_1229)	-	1186402..1187268 (+)	867	WP_257396144.1	glycosyltransferase	-
CLC19172_RS06250	-	1187250..1187621 (+)	372	WP_412097188.1	hypothetical protein	-
CLC19172_RS06255	-	1187584..1188084 (+)	501	WP_257396142.1	hypothetical protein	-
CLC19172_RS06260 (CLC19172_1231)	-	1188090..1189250 (-)	1161	WP_412097189.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34795.02 Da
• Isoelectric Point: 10.3016

>NTDB_id=1086924 CLC19172_RS06225 WP_257396148.1 1183689..1184603(-) (waaF) [Campylobacter lari subsp. concheus strain RM19172]
MNIFINLPTWLGDSVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKVTSNVLKLPIKAKSTQKLLGINPGAHFGSAKRW
EASYFARVAKEFSSTYQILIFGVESEREICDEIEQFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNVKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=1086924 CLC19172_RS06225 WP_257396148.1 1183689..1184603(-) (waaF) [Campylobacter lari subsp. concheus strain RM19172]
ATGAATATTTTTATCAATCTTCCCACTTGGCTTGGCGATTCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTCTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTCAAAGTCACTTCAAATGTTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAACTTTTGGGTATAAATCCAGGCGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCAAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACTTATCAAATTTTGATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACAATTTCTTCTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGAGTGAAAACAGTAGCTATTTTTGGTTCGACTAAATTTAGTCAAACCTCACCTTGGCAAAAAAATGTTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (109-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.694	100	0.658