Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CLC19172_RS01950 Genome accession   NZ_CP177362
Coordinates   353021..354412 (+) Length   463 a.a.
NCBI ID   WP_149062098.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19172     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348021..359412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19172_RS01935 (CLC19172_0379) - 348406..349050 (+) 645 WP_214098586.1 HAD family hydrolase -
  CLC19172_RS01940 (CLC19172_0380) nifJ 349168..352722 (+) 3555 WP_257396012.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CLC19172_RS01945 (CLC19172_0381) - 352789..353049 (+) 261 WP_148308367.1 hypothetical protein -
  CLC19172_RS01950 (CLC19172_0382) ctsD 353021..354412 (+) 1392 WP_149062098.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CLC19172_RS01955 (CLC19172_0383) - 354393..354722 (+) 330 WP_052239429.1 transformation system, membrane protein CtsX -
  CLC19172_RS01960 (CLC19172_0384) - 354715..356220 (+) 1506 WP_149062099.1 GspE/PulE family protein -
  CLC19172_RS01965 (CLC19172_0385) - 356217..357377 (+) 1161 WP_257396011.1 type II secretion system F family protein -
  CLC19172_RS01970 (CLC19172_0386) - 357374..358126 (-) 753 WP_039668085.1 TSUP family transporter -
  CLC19172_RS01975 (CLC19172_0387) - 358111..358860 (-) 750 WP_220517264.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52579.47 Da        Isoelectric Point: 7.9605

>NTDB_id=1086915 CLC19172_RS01950 WP_149062098.1 353021..354412(+) (ctsD) [Campylobacter lari subsp. concheus strain RM19172]
MKKIIFLFISILTFTNVFALQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGIKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1086915 CLC19172_RS01950 WP_149062098.1 353021..354412(+) (ctsD) [Campylobacter lari subsp. concheus strain RM19172]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCATTACAGTGTCATCAACGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAACTATCTGCACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATTTAAAAGATCTAAATAAAAGACTTAAAAAACAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTATTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACTACTGTACTTTCTAACCCAAAACTTATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGCGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAAGGTACTGAAAATGGTACAACTATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGACAAACTTTAATTTTGGGTGGATTGATTAGCAAAAAT
ACGATTAGTAACCATAATGAAGTAAGTGCTTTATCTAAGATACCACTTTTTGGCGCTTTGTTTCAAGGAAAGCAAAATTT
GGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

57.051

100

0.577

Multiple sequence alignment