Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC15629_RS06565 Genome accession   NZ_CP177359
Coordinates   1277574..1278488 (-) Length   304 a.a.
NCBI ID   WP_257935979.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15629     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272574..1283488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15629_RS06540 (UPTC15629_1292) mgtE 1272911..1274254 (+) 1344 WP_257935981.1 magnesium transporter -
  UPTC15629_RS06545 (UPTC15629_1293) tpx 1274267..1274785 (+) 519 WP_214116029.1 thiol peroxidase -
  UPTC15629_RS06550 (UPTC15629_1294) - 1274782..1276167 (-) 1386 WP_257935980.1 replicative DNA helicase -
  UPTC15629_RS06555 (UPTC15629_1295) cysK 1276180..1277082 (-) 903 WP_214115490.1 cysteine synthase A -
  UPTC15629_RS06560 (UPTC15629_1296) - 1277179..1277481 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC15629_RS06565 (UPTC15629_1297) waaF 1277574..1278488 (-) 915 WP_257935979.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC15629_RS06570 (UPTC15629_1298) - 1278542..1279360 (+) 819 WP_257935978.1 glycosyltransferase family 2 protein -
  UPTC15629_RS06575 (UPTC15629_1299) - 1279352..1280203 (-) 852 WP_412097298.1 alpha-2,3-sialyltransferase -
  UPTC15629_RS06580 (UPTC15629_1300) - 1280298..1281164 (+) 867 WP_257936061.1 glycosyltransferase -
  UPTC15629_RS06585 (UPTC15629_1301) - 1281167..1281964 (+) 798 WP_257936060.1 class I SAM-dependent methyltransferase -
  UPTC15629_RS06590 (UPTC15629_1302) - 1281969..1283129 (-) 1161 WP_412097299.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34591.76 Da        Isoelectric Point: 10.2615

>NTDB_id=1086891 UPTC15629_RS06565 WP_257935979.1 1277574..1278488(-) (waaF) [Campylobacter lari strain RM15629]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENVQILVENKKQRYKQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALSFKVTSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISILDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1086891 UPTC15629_RS06565 WP_257935979.1 1277574..1278488(-) (waaF) [Campylobacter lari strain RM15629]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCCAAATTTACTTTTTATGGTTCTTTTGTTAGCACAGAGCTTTTTAAACACTTTGAAAATGTGCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAGTTTTAAAGTCACTTCAAATGCTTTAA
AACTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCAAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACTCATCAAATTTTAATCTTTGGAGTGGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACATTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATACTTGATTTACTCATCACAAACGATAGTGGTCCTATGCACATAGGTGCAGCTTAT
GGGGTGAAAACGGTGGCTGTTTTTGGCTCTACTAAATTTAGTCAAACCTCTCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(139-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.968

100

0.671

Multiple sequence alignment