Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   UPTC15629_RS02005 Genome accession   NZ_CP177359
Coordinates   376821..378212 (+) Length   463 a.a.
NCBI ID   WP_039617665.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15629     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371821..383212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15629_RS01990 (UPTC15629_0393) - 372205..372849 (+) 645 WP_257935483.1 HAD family hydrolase -
  UPTC15629_RS01995 (UPTC15629_0394) nifJ 372968..376522 (+) 3555 WP_257935484.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UPTC15629_RS02000 (UPTC15629_0395) - 376526..376849 (+) 324 WP_039617662.1 hypothetical protein -
  UPTC15629_RS02005 (UPTC15629_0396) ctsD 376821..378212 (+) 1392 WP_039617665.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UPTC15629_RS02010 (UPTC15629_0397) - 378193..378522 (+) 330 WP_052241327.1 transformation system, membrane protein CtsX -
  UPTC15629_RS02015 (UPTC15629_0398) - 378515..380029 (+) 1515 WP_257935485.1 GspE/PulE family protein -
  UPTC15629_RS02020 (UPTC15629_0399) - 380026..381186 (+) 1161 WP_257935486.1 type II secretion system F family protein -
  UPTC15629_RS02025 (UPTC15629_0400) - 381183..381935 (-) 753 WP_257935487.1 TSUP family transporter -
  UPTC15629_RS02030 (UPTC15629_0401) - 381920..382669 (-) 750 WP_257935488.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52627.43 Da        Isoelectric Point: 7.9611

>NTDB_id=1086881 UPTC15629_RS02005 WP_039617665.1 376821..378212(+) (ctsD) [Campylobacter lari strain RM15629]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1086881 UPTC15629_RS02005 WP_039617665.1 376821..378212(+) (ctsD) [Campylobacter lari strain RM15629]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACCCAAAATTATTTACACATAAGAAAGATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCACTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCAGTAGATTCAAGACCTAAAC
AAGGCGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACGGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGGATTATCACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAGGCTATTTT
AAATTTATTACAAGAAAATGGTAAAACTACTGTACTTTCTAACCCAAAACTCATGGCACTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCTAAGGGCACTGAAAATGGTACGACTATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATAAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCACAGACAAAATAAACCAAGAAATATAGCGCCAGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGACAAACTTTAATTTTGGGCGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCTTTATCTAAAATACCACTTTTTGGTGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTGTTGAGTTTAAAAGAAT
TAGGTTTTGAGCATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.838

100

0.575

Multiple sequence alignment