Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACLB6P_RS13920 Genome accession   NZ_CP177302
Coordinates   2853466..2854071 (-) Length   201 a.a.
NCBI ID   WP_126524153.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Goldcoast strain T67     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2848466..2859071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLB6P_RS13905 helD 2848683..2850737 (-) 2055 WP_126524152.1 DNA helicase IV -
  ACLB6P_RS13910 - 2850861..2851307 (+) 447 WP_001261222.1 YccF domain-containing protein -
  ACLB6P_RS13915 yccS 2851326..2853479 (+) 2154 WP_000950876.1 YccS family putative transporter -
  ACLB6P_RS13920 sxy/tfoX 2853466..2854071 (-) 606 WP_126524153.1 TfoX/Sxy family DNA transformation protein Regulator
  ACLB6P_RS13925 sulA 2854288..2854797 (+) 510 WP_023195822.1 SOS-induced cell division inhibitor SulA -
  ACLB6P_RS13930 ompA 2855154..2856206 (+) 1053 WP_001670727.1 porin OmpA -
  ACLB6P_RS13935 matP 2856278..2856730 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ACLB6P_RS13940 - 2856916..2858676 (+) 1761 WP_126524154.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23173.95 Da        Isoelectric Point: 9.0103

>NTDB_id=1086611 ACLB6P_RS13920 WP_126524153.1 2853466..2854071(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Goldcoast strain T67]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVNESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1086611 ACLB6P_RS13920 WP_126524153.1 2853466..2854071(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Goldcoast strain T67]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGAATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746

Multiple sequence alignment