Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACLF6N_RS14645 Genome accession   NZ_CP177279
Coordinates   2682199..2682945 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain KFRI-P74     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2677199..2687945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS14620 (ACLF6N_14620) mreC 2677605..2678477 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACLF6N_RS14625 (ACLF6N_14625) mreB 2678508..2679521 (-) 1014 WP_326043373.1 cell shape-determining protein MreB -
  ACLF6N_RS14630 (ACLF6N_14630) radC 2679613..2680308 (-) 696 WP_412052445.1 RadC family protein -
  ACLF6N_RS14635 (ACLF6N_14635) maf 2680345..2680914 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  ACLF6N_RS14640 (ACLF6N_14640) spoIIB 2681067..2682065 (-) 999 WP_412052446.1 stage II sporulation protein SpoIIB -
  ACLF6N_RS14645 (ACLF6N_14645) comC 2682199..2682945 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  ACLF6N_RS14650 (ACLF6N_14650) folC 2683085..2684377 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACLF6N_RS14655 (ACLF6N_14655) valS 2684437..2687079 (-) 2643 WP_129134144.1 valine--tRNA ligase -
  ACLF6N_RS14660 (ACLF6N_14660) - 2687527..2687718 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=1086562 ACLF6N_RS14645 WP_072592551.1 2682199..2682945(-) (comC) [Bacillus subtilis strain KFRI-P74]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1086562 ACLF6N_RS14645 WP_072592551.1 2682199..2682945(-) (comC) [Bacillus subtilis strain KFRI-P74]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment