Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACLF6N_RS12865 Genome accession   NZ_CP177279
Coordinates   2371809..2372612 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain KFRI-P74     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2366809..2377612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS12840 (ACLF6N_12840) glpQB 2367947..2368678 (-) 732 WP_412052438.1 glycerophosphodiester phosphodiesterase -
  ACLF6N_RS12845 (ACLF6N_12845) yqiI 2368757..2369377 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLF6N_RS12850 (ACLF6N_12850) - 2369397..2369693 (-) 297 WP_014480225.1 hypothetical protein -
  ACLF6N_RS12855 (ACLF6N_12855) - 2370001..2370153 (+) 153 WP_014480226.1 hypothetical protein -
  ACLF6N_RS12860 (ACLF6N_12860) yqiG 2370226..2371344 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ACLF6N_RS12865 (ACLF6N_12865) spo0A 2371809..2372612 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACLF6N_RS12870 (ACLF6N_12870) spoIVB 2372888..2374168 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  ACLF6N_RS12875 (ACLF6N_12875) recN 2374343..2376073 (-) 1731 WP_129134317.1 DNA repair protein RecN Machinery gene
  ACLF6N_RS12880 (ACLF6N_12880) argR 2376110..2376559 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ACLF6N_RS12885 (ACLF6N_12885) yqxC 2376657..2377502 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1086543 ACLF6N_RS12865 WP_003226427.1 2371809..2372612(-) (spo0A) [Bacillus subtilis strain KFRI-P74]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1086543 ACLF6N_RS12865 WP_003226427.1 2371809..2372612(-) (spo0A) [Bacillus subtilis strain KFRI-P74]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment