Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACLF6N_RS06185 Genome accession   NZ_CP177279
Coordinates   1161859..1162437 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain KFRI-P74     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156859..1167437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS06160 (ACLF6N_06160) - 1157370..1157885 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  ACLF6N_RS06165 (ACLF6N_06165) - 1158126..1158752 (-) 627 Protein_1149 protoglobin domain-containing protein -
  ACLF6N_RS06170 (ACLF6N_06170) comW 1158807..1160336 (-) 1530 Protein_1150 FAD-dependent oxidoreductase -
  ACLF6N_RS06175 (ACLF6N_06175) yhxC 1160448..1161305 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ACLF6N_RS06180 (ACLF6N_06180) yhzC 1161333..1161566 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACLF6N_RS06185 (ACLF6N_06185) comK 1161859..1162437 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACLF6N_RS06190 (ACLF6N_06190) yhxD 1162484..1163383 (-) 900 WP_076457899.1 SDR family oxidoreductase -
  ACLF6N_RS06195 (ACLF6N_06195) yhjA 1163600..1163869 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  ACLF6N_RS06200 (ACLF6N_06200) yhjB 1163913..1165382 (-) 1470 WP_017695341.1 sodium:solute symporter family protein -
  ACLF6N_RS06205 (ACLF6N_06205) yhjC 1165379..1165579 (-) 201 WP_043857242.1 DUF3311 domain-containing protein -
  ACLF6N_RS06210 (ACLF6N_06210) - 1165765..1166127 (-) 363 WP_121591604.1 hypothetical protein -
  ACLF6N_RS06215 (ACLF6N_06215) yhjE 1166279..1166902 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  ACLF6N_RS06220 (ACLF6N_06220) lepB 1166904..1167410 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1086523 ACLF6N_RS06185 WP_003245329.1 1161859..1162437(+) (comK) [Bacillus subtilis strain KFRI-P74]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1086523 ACLF6N_RS06185 WP_003245329.1 1161859..1162437(+) (comK) [Bacillus subtilis strain KFRI-P74]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment